RTN4RL1 Gene
protein-coding GIFtS : 50
GCID: GC17 M001786
reticulon 4 receptor-like 1
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Aliasesfor RTN4RL1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Reticulon 4 Receptor-Like 1 1 2 Nogo-66 Receptor-Related Protein 32 3 NGRH21 2 3 DKFZp547J1441 NgR31 2 3 Reticulon-4 Receptor-Like 12 Nogo Receptor-Like 22 3 NGRL23 Nogo-66 Receptor Homolog 22 3
Export aliases for RTN4RL1 gene to outside databases Previous GC identifers: GC17M002046 GC17M001734
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Summariesfor RTN4RL1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2 Function : May play a role in regulating axonal regeneration and plasticity in the adult central nervous system
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Genomic Viewsfor RTN4RL1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010718.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RTN4RL1 gene promoter: c-Fos Max1 NF-1 NCX/Ncx SREBP-1c SREBP-1b GATA-2 SREBP-1a Chx10 c-Myc Other transcription factors Search SABiosciences Chromatin IP Primers for RTN4RL1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RTN4RL1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17p13.3 Ensembl cytogenetic band: 17p13.3 HGNC cytogenetic band: 17p13.3 RTN4RL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M001786: view genomic region
(about GC identifiers )
Start:
1,837,971 bp from pter
End:
1,928,178 bp from pter
Size:
90,208 bases
Orientation:
minus strand
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Proteinsfor RTN4RL1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2 (See
protein sequence )Recommended Name: Reticulon-4 receptor-like 1 precursor Size : 441 amino acids; 49065 Da
Subcellular location : Cell membrane; Lipid-anchor, GPI-anchor. Note=Localized to the surface of neurons, includingaxons
Secondary accessions : A1A5E3 Q8ND46Explore the universe of human proteins at neXtProt for RTN4RL1: NX_Q86UN2 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q86UN2 RTN4RL1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_848663.1 ENSEMBL proteins: ENSP00000330631 Human Recombinant Protein Products for RTN4RL1: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
RTN4RL1 for ontologies About GeneDecksing RTN4RL1 Antibody Products: Assay Products for RTN4RL1:
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Protein
Domains / Familiesfor RTN4RL1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RTN4RL1 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q86UN2 ProtoNet protein and cluster: Q86UN2
2 Blocks protein families : IPB000372 Cysteine-rich flanking region IPB000483 Cysteine-rich flanking region UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2 Similarity : Belongs to the Nogo receptor familySimilarity : Contains 8 LRR (leucine-rich) repeatsSimilarity : Contains 1 LRRCT domainSimilarity : Contains 1 LRRNT domain
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Functionfor RTN4RL1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: R4RL1_HUMAN, Q86UN2 Function : May play a role in regulating axonal regeneration and plasticity in the adult central nervous system
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
RTN4RL1 for ontologies About GeneDecksing Phenotypes: 2 GenomeRNAi human phenotypes for RTN4RL1 : 3 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Rtn4rl1) :
RTN4RL1 for phenotypes About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RTN4RL1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RTN4RL1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RTN4RL1 (NM_178568 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RTN4RL1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RTN4RL1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RTN4RL1
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Pathways & Interactionsfor RTN4RL1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RTN4RL1 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for RTN4RL1 (Q86UN2 3 ENSP00000330631 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
RTN4RL1 for ontologies About GeneDecksing
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Drugs & Compoundsfor RTN4RL1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RTN4RL1 Search CenterWatch for drugs/clinical trials and news about RTN4RL1 / R4RL1
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Transcriptsfor RTN4RL1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for RTN4RL1 gene: NM_178568.2 Unigene Cluster for RTN4RL1:
Reticulon 4 receptor-like 1 Hs.22917 [show with all ESTs ] Unigene Representative Sequence: NM_178568 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000331238 (uc002ftp.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RTN4RL1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RTN4RL1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RTN4RL1 (NM_178568 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RTN4RL1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RTN4RL1
Additional cDNA sequence: AF532859.1 AL834409.1 AY250219.1 BC023311.1 BC128608.1
1 DOTS entry : DT.111911
24/43 AceView cDNA sequences (see all 43 ):
CA429077 BM692581 BM826920 BQ445827 BU618906 R20190 BM976284 BU740371 AA453794 AF532859 AY250219 BQ771530 AI278851 BM709737 BM680479 BC023311 AI693887 BK001305 BM663803 CA454639 NM_178568 AL834409 AI680692 BM718025 GeneLoc Exon Structure
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Expression for RTN4RL1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RTN4RL1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: -- About this image RTN4RL1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Eye Inner Nuclear Layer Type1 Off Cone Bipolar Cells Bipolar, Retina Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See RTN4RL1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RTN4RL1 SOURCE GeneReport for Unigene cluster: Hs.22917 UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2 Tissue specificity : Predominantly expressed in brain. Expressed at lower levels in kidney, lung, mammary gland,placenta, salivary gland, skeletal muscle and spleen SABiosciences Custom PCR Arrays for RTN4RL1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RTN4RL1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat RTN4RL1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RTN4RL1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RTN4RL1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RTN4RL1
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Orthologsfor RTN4RL1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for RTN4RL1 gene from 3/13 species (see all 13 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
RTN4RL11
reticulon 4 receptor-like 1
74.28(n) 74.13(a)
 
427828 XM_425402.3 XP_425402.3
lizard (Anolis carolinensis)
Reptilia
RTN4RL16
--
60(a)
1 ↔ 1
GL343393.1(4196-5458)
zebrafish (Danio rerio)
Actinopterygii
rtn4rl1b1
reticulon 4 receptor-like 1b
62.11(n) 61.15(a)
 
403308 NM_203480.1 NP_982347.1
ENSEMBL Gene Tree for RTN4RL1 (if available)TreeFam Gene Tree for RTN4RL1 (if available)
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Paralogsfor RTN4RL1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RTN4RL1 gene NYX 2 LRRC53 2 RTN4R 2 LRRC70 2 RTN4RL2 2 2 SIMAP similar genes for RTN4RL1 using alignment to 1 protein entry: R4RL1_HUMAN :RTN4RL2 RTN4R
RTN4RL1 for paralogs About GeneDecksing
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Genomic Variantsfor RTN4RL1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RTN4RL1 (1837971 - 1928178 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 5 variations for RTN4RL1 4 CNVs : 102382 67104 7142 72767 1 Indel : 45512 Human Gene Mutation Database (HGMD) : RTN4RL1 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RTN4RL1
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Disorders
/ Diseasesfor RTN4RL1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RTN4RL1 for disorders About GeneDecksing
OMIM gene information: 610461
OMIM disorders : --1 disease for RTN4RL1 : About MalaCards neuronitis Export disorders for RTN4RL1 gene to outside databases
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Publicationsfor RTN4RL1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RTN4RL1 gene integrated from 9 sources : (articles sorted by number of sources associating them with RTN4RL1) Utopia : connect your pdf to the dynamic world of online information
Structure and axon outgrowth inhibitor binding of the Nogo-66 receptor and related proteins. (PubMed id 12839991) 1 , 2 , 9 Barton W.A.... Nikolov D.B. (2003) Two novel mammalian nogo receptor homologs differentially expressed in the central and peripheral nervous systems. (PubMed id 14664809) 1 , 2 , 9 Lauren J.... Timmusk T. (2003) Characterization of two novel proteins, NgRH1 and NgRH2, structurally and biochemically homologous to the Nogo-66 receptor. (PubMed id 12694398) 1 , 2 Pignot V.... Frentzel S. (2003) Nogo receptor 3, a paralog of Nogo-66 receptor 1 (NgR1 ), may function as a NgR1 co-receptor for Nogo-66. (PubMed id 22133682) 1 Zhang L....Zhang J. (2011) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Oligodendrocyte-myelin glycoprotein is a Nogo receptor ligand that inhibits neurite outgrowth. (PubMed id 12068310) 1 Wang K.C....He Z. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for RTN4RL1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RTN4RL1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RTN4RL1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing RTN4RL1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for RTN4RL1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for RTN4RL1 gene: Search GeneIP for patents involving RTN4RL1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RTN4RL1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for RTN4RL1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RTN4RL1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RTN4RL1 OriGene Protein Over-expression Lysate for RTN4RL1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for RTN4RL1 OriGene 3'-UTR Clone for RTN4RL1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RTN4RL1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RTN4RL1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for RTN4RL1 OriGene Custom Protein Services for RTN4RL1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RTN4RL1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RTN4RL1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RTN4RL1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RTN4RL1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RTN4RL1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RTN4RL1
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RTN4RL1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RTN4RL1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RTN4RL1
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Aliases for RTN4RL1
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Disorders / Diseases for RTN4RL1
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Expression for RTN4RL1
Function for RTN4RL1
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Proteins for RTN4RL1
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