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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RTN4RL1 Gene

protein-coding   GIFtS: 50
GCID: GC17M001786

reticulon 4 receptor-like 1

 Explore 1 disease affiliated with
RTN4RL1 via our new
 Human Malady Compendium 
Biological research products
for RTN4RL1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Reticulon 4 Receptor-Like 11 2     Nogo-66 Receptor-Related Protein 32 3
NGRH21 2 3     DKFZp547J1441
NgR31 2 3     Reticulon-4 Receptor-Like 12
Nogo Receptor-Like 22 3     NGRL23
Nogo-66 Receptor Homolog 22 3     

External Ids:    HGNC: 213291   Entrez Gene: 1467602   Ensembl: ENSG000001859247   OMIM: 6104615   UniProtKB: Q86UN23   

Export aliases for RTN4RL1 gene to outside databases

Previous GC identifers: GC17M002046 GC17M001734


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2
Function: May play a role in regulating axonal regeneration and plasticity in the adult central nervous system




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.1  NT_010718.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RTN4RL1 gene promoter:
         c-Fos   Max1   NF-1   NCX/Ncx   SREBP-1c   SREBP-1b   GATA-2   SREBP-1a   Chx10   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRTN4RL1 promoter sequence
   Search SABiosciences Chromatin IP Primers for RTN4RL1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RTN4RL1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.3   Ensembl cytogenetic band:  17p13.3   HGNC cytogenetic band: 17p13.3

RTN4RL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RTN4RL1 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M001786:  view genomic region     (about GC identifiers)

Start:
1,837,971 bp from pter      End:
1,928,178 bp from pter
Size:
90,208 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2 (See protein sequence)
Recommended Name: Reticulon-4 receptor-like 1 precursor  
Size: 441 amino acids; 49065 Da
Subcellular location: Cell membrane; Lipid-anchor, GPI-anchor. Note=Localized to the surface of neurons, including
axons
Secondary accessions: A1A5E3 Q8ND46

Explore the universe of human proteins at neXtProt for RTN4RL1: NX_Q86UN2

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q86UN2

  • RTN4RL1 Protein expression data from MOPED and PaxDb:    About this image 
    RTN4RL1 Protein Expression
    REFSEQ proteins: NP_848663.1  
    ENSEMBL proteins: 
     ENSP00000330631  

    Human Recombinant Protein Products for RTN4RL1: 
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    Uscn Proteins for RTN4RL1

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0009897external side of plasma membrane IEA--
    GO:0009986cell surface IDA--
    GO:0045121membrane raft IEA--
    GO:0046658anchored to plasma membrane IDA12694398

    RTN4RL1 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for RTN4RL1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RTN4RL1 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR000483 Cys-rich_flank_reg_C
     IPR000372 LRR-contain_N
     IPR001611 Leu-rich_rpt
     IPR003591 Leu-rich_rpt_typical-subtyp

    Graphical View of Domain Structure for InterPro Entry Q86UN2

    ProtoNet protein and cluster: Q86UN2

    2 Blocks protein families:
    IPB000372 Cysteine-rich flanking region
    IPB000483 Cysteine-rich flanking region


    UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2
    Similarity: Belongs to the Nogo receptor family
    Similarity: Contains 8 LRR (leucine-rich) repeats
    Similarity: Contains 1 LRRCT domain
    Similarity: Contains 1 LRRNT domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: R4RL1_HUMAN, Q86UN2
    Function: May play a role in regulating axonal regeneration and plasticity in the adult central nervous system

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872receptor activity IDA12694398
         
    RTN4RL1 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for RTN4RL1:
     Decreased G3BP1 protein expres  Decreased Salmonella enterica  

         3 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Rtn4rl1):
     endocrine/exocrine gland  liver/biliary system  nervous system 

    RTN4RL1 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for RTN4RL1 

    miRNA
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    hsa-miR-448 hsa-miR-200a hsa-miR-4305 hsa-miR-374a hsa-miR-500a hsa-miR-340 hsa-miR-410 hsa-miR-449a
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    Inhib. RNA
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    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RTN4RL1


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RTN4RL1

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for RTN4RL1 (Q86UN23 ENSP000003306314) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    OMGP235153, ENSP000002472714I2D: score=1 STRING: ENSP00000247271
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0031103axon regeneration TAS14664809

    RTN4RL1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RTN4RL1
    Search CenterWatch for drugs/clinical trials and news about RTN4RL1 / R4RL1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RTN4RL1 gene: 
    NM_178568.2  

    Unigene Cluster for RTN4RL1:

    Reticulon 4 receptor-like 1
    Hs.22917  [show with all ESTs]
    Unigene Representative Sequence: NM_178568
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000331238(uc002ftp.3)

    miRNA
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    8/26 QIAGEN miScript miRNA Assays for microRNAs that regulate RTN4RL1 (see all 26):
    hsa-miR-448 hsa-miR-200a hsa-miR-4305 hsa-miR-374a hsa-miR-500a hsa-miR-340 hsa-miR-410 hsa-miR-449a
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    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RTN4RL1 (see all 7)
    OriGene shRNA RFP: RTN4RL1
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RTN4RL1
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    Additional cDNA sequence: 

    AF532859.1 AL834409.1 AY250219.1 BC023311.1 BC128608.1 

    1 DOTS entry:

    DT.111911 

    24/43 AceView cDNA sequences (see all 43):

    CA429077 BM692581 BM826920 BQ445827 BU618906 R20190 BM976284 BU740371 
    AA453794 AF532859 AY250219 BQ771530 AI278851 BM709737 BM680479 BC023311 
    AI693887 BK001305 BM663803 CA454639 NM_178568 AL834409 AI680692 BM718025 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RTN4RL1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    RTN4RL1 Expression
    About this image

    RTN4RL1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EyeInner Nuclear LayerType1 Off Cone Bipolar CellsBipolar, Retina
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See RTN4RL1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RTN4RL1

    SOURCE GeneReport for Unigene cluster: Hs.22917

    UniProtKB/Swiss-Prot: R4RL1_HUMAN, Q86UN2
    Tissue specificity: Predominantly expressed in brain. Expressed at lower levels in kidney, lung, mammary gland,
    placenta, salivary gland, skeletal muscle and spleen

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RTN4RL1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for RTN4RL1 gene from 3/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves RTN4RL11 reticulon 4 receptor-like 1 74.28(n)
    74.13(a)
      427828  XM_425402.3  XP_425402.3 
    lizard
    (Anolis carolinensis)
    Reptilia RTN4RL16
    --
    60(a)
    1 ↔ 1
    GL343393.1(4196-5458)
    zebrafish
    (Danio rerio)
    Actinopterygii rtn4rl1b1 reticulon 4 receptor-like 1b 62.11(n)
    61.15(a)
      403308  NM_203480.1  NP_982347.1 


    ENSEMBL Gene Tree for RTN4RL1 (if available)
    TreeFam Gene Tree for RTN4RL1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RTN4RL1 gene
    NYX2  LRRC532  RTN4R2  LRRC702  RTN4RL22  
    2 SIMAP similar genes for RTN4RL1 using alignment to 1 protein entry:     R4RL1_HUMAN:
    RTN4RL2    RTN4R

    RTN4RL1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1863 NCBI SNPs in RTN4RL1 are shown (see all 1863    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1505017051,2
    --1837492(+) GAGACA/GTGTGC 1 -- int10--------
    rs80805491,2
    C,F,A,H--1837525(+) TGTCCG/TGGTGG 1 -- int112Minor allele frequency- T:0.26NA EA WA CSA 732
    rs80805781,2
    C,F,A,H--1837606(+) CAGCCG/ACCTGC 1 -- int18Minor allele frequency- A:0.29NA WA CSA EA 370
    rs1911722281,2
    --1837613(+) CTGCCA/GGGCGC 1 -- int10--------
    rs1830764711,2
    --1837696(+) TCCTCC/TGGGGA 1 -- int10--------
    rs1496888231,2
    --1837732(+) GGGCAG/TTCAGA 1 -- int10--------
    rs1870715801,2
    --1837756(+) ATCATC/GATCTG 1 -- int10--------
    rs1903862601,2
    --1837764(+) CTGTGC/TGGGCA 1 -- int10--------
    rs1445167411,2
    --1837785(+) CACGAA/GACGGA 1 -- int10--------
    rs1409183921,2
    --1837787(+) CGAAAC/TGGAGC 1 -- int10--------

    HapMap Linkage Disequilibrium report for RTN4RL1 (1837971 - 1928178 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 5 variations for RTN4RL1
         4 CNVs: 102382 67104 7142 72767
         1 Indel: 45512
    Human Gene Mutation Database (HGMD): RTN4RL1

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RTN4RL1 for disorders           About GeneDecksing

    OMIM gene information: 610461    OMIM disorders: --

    1 disease for RTN4RL1:    About MalaCards
    neuronitis


    Export disorders for RTN4RL1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RTN4RL1 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with RTN4RL1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Structure and axon outgrowth inhibitor binding of the Nogo-66 receptor and related proteins. (PubMed id 12839991)1, 2, 9 Barton W.A.... Nikolov D.B. (2003)
    2. Two novel mammalian nogo receptor homologs differentially expressed in the central and peripheral nervous systems. (PubMed id 14664809)1, 2, 9 Lauren J.... Timmusk T. (2003)
    3. Characterization of two novel proteins, NgRH1 and NgRH2, structurally and biochemically homologous to the Nogo-66 receptor. (PubMed id 12694398)1, 2 Pignot V.... Frentzel S. (2003)
    4. Nogo receptor 3, a paralog of Nogo-66 receptor 1 (NgR1 ), may function as a NgR1 co-receptor for Nogo-66. (PubMed id 22133682)1 Zhang L....Zhang J. (2011)
    5. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    7. Oligodendrocyte-myelin glycoprotein is a Nogo receptor ligand that inhibits neurite outgrowth. (PubMed id 12068310)1 Wang K.C....He Z. (2002)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 146760 HGNC: 21329 AceView: RTN4RL1 Ensembl:ENSG00000185924 euGenes: HUgn146760
    ECgene: RTN4RL1 H-InvDB: RTN4RL1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RTN4RL1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RTN4RL1 gene:
    Search GeneIP for patents involving RTN4RL1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

     
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