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Aliases for RTKN Gene

Aliases for RTKN Gene

  • Rhotekin 2 3
  • RTKN1 4

External Ids for RTKN Gene

Previous GeneCards Identifiers for RTKN Gene

  • GC02M074790
  • GC02M074865
  • GC02M074610
  • GC02M074627
  • GC02M074564
  • GC02M074506
  • GC02M074653
  • GC02M074389
  • GC02M074660
  • GC02M074667

Summaries for RTKN Gene

Entrez Gene Summary for RTKN Gene

  • This gene encodes a scaffold protein that interacts with GTP-bound Rho proteins. Binding of this protein inhibits the GTPase activity of Rho proteins. This protein may interfere with the conversion of active, GTP-bound Rho to the inactive GDP-bound form by RhoGAP. Rho proteins regulate many important cellular processes, including cytokinesis, transcription, smooth muscle contraction, cell growth and transformation. Dysregulation of the Rho signal transduction pathway has been implicated in many forms of cancer. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for RTKN Gene

RTKN (Rhotekin) is a Protein Coding gene. Among its related pathways are Actin Nucleation by ARP-WASP Complex and G13 Signaling Pathway. GO annotations related to this gene include GTP binding and GTPase inhibitor activity. An important paralog of this gene is RTKN2.

UniProtKB/Swiss-Prot for RTKN Gene

  • Mediates Rho signaling to activate NF-kappa-B and may confer increased resistance to apoptosis to cells in gastric tumorigenesis. May play a novel role in the organization of septin structures.

Gene Wiki entry for RTKN Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RTKN Gene

Genomics for RTKN Gene

Regulatory Elements for RTKN Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RTKN Gene

Start:
74,425,836 bp from pter
End:
74,442,422 bp from pter
Size:
16,587 bases
Orientation:
Minus strand

Genomic View for RTKN Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RTKN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RTKN Gene

Proteins for RTKN Gene

  • Protein details for RTKN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BST9-RTKN_HUMAN
    Recommended name:
    Rhotekin
    Protein Accession:
    Q9BST9
    Secondary Accessions:
    • H7BXD4
    • Q8WVN1
    • Q96PT6
    • Q9HB05

    Protein attributes for RTKN Gene

    Size:
    563 amino acids
    Molecular mass:
    62667 Da
    Quaternary structure:
    • Interacts via its C-terminal region with the TAX1BP3 PDZ domain. This interaction facilitates Rho-mediated activation of the c-Fos serum response element (SRE). Interacts with SEPT9. Specifically binds to GTP-bound RHOA, RHOB and RHOC and inhibits their GTPase activity.
    SequenceCaution:
    • Sequence=AAL16767.1; Type=Frameshift; Positions=15, 20; Evidence={ECO:0000305};

    Alternative splice isoforms for RTKN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RTKN Gene

Proteomics data for RTKN Gene at MOPED

Post-translational modifications for RTKN Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RTKN Gene

No data available for DME Specific Peptides for RTKN Gene

Domains for RTKN Gene

Gene Families for RTKN Gene

HGNC:
  • PLEKH :Pleckstrin homology (PH) domain containing

Protein Domains for RTKN Gene

Suggested Antigen Peptide Sequences for RTKN Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BST9

UniProtKB/Swiss-Prot:

RTKN_HUMAN :
  • Q9BST9
Domain:
  • Contains 1 PH domain.
Similarity:
  • Contains 1 REM (Hr1) repeat.
genes like me logo Genes that share domains with RTKN: view

Function for RTKN Gene

Molecular function for RTKN Gene

GENATLAS Biochemistry: rhotekin,61kDa,expressed in many tissues including brain,muscle,binding GTP bound form of Rho inhibiting its GTPase activity
UniProtKB/Swiss-Prot Function: Mediates Rho signaling to activate NF-kappa-B and may confer increased resistance to apoptosis to cells in gastric tumorigenesis. May play a novel role in the organization of septin structures.

Gene Ontology (GO) - Molecular Function for RTKN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005095 GTPase inhibitor activity IDA 10940294
GO:0005515 protein binding IPI 10940294
GO:0005525 GTP binding IEA --
GO:0017048 Rho GTPase binding --
GO:0017049 GTP-Rho binding IDA 10940294
genes like me logo Genes that share ontologies with RTKN: view

Animal Model Products

miRNA for RTKN Gene

miRTarBase miRNAs that target RTKN

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RTKN Gene

Localization for RTKN Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RTKN Gene COMPARTMENTS Subcellular localization image for RTKN gene
Compartment Confidence
cytoskeleton 2
cytosol 2
mitochondrion 2
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for RTKN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with RTKN: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RTKN Gene

Pathways for RTKN Gene

genes like me logo Genes that share pathways with RTKN: view

Pathways by source for RTKN Gene

1 Qiagen pathway for RTKN Gene
1 GeneGo (Thomson Reuters) pathway for RTKN Gene

Gene Ontology (GO) - Biological Process for RTKN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
GO:0007165 signal transduction IDA 10940294
GO:0007264 small GTPase mediated signal transduction TAS --
GO:0007266 Rho protein signal transduction IDA 15480428
GO:0032185 septin cytoskeleton organization IEA --
genes like me logo Genes that share ontologies with RTKN: view

Compounds for RTKN Gene

(1) HMDB Compounds for RTKN Gene

Compound Synonyms Cas Number PubMed IDs
Guanosine triphosphate
  • 5'-GTP
86-01-1

(2) Novoseek inferred chemical compound relationships for RTKN Gene

Compound -log(P) Hits PubMed IDs
butyrate 38.6 1
serine 5.98 1
genes like me logo Genes that share compounds with RTKN: view

Transcripts for RTKN Gene

Unigene Clusters for RTKN Gene

Rhotekin:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RTKN

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RTKN Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15a ·
SP1: - - - - - - - -
SP2: - - - -
SP3: - - - - -
SP4: - - - -
SP5: - -
SP6: - - -
SP7:
SP8: - - - - -
SP9:
SP10: - - - -

ExUns: 15b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for RTKN Gene

GeneLoc Exon Structure for
RTKN
ECgene alternative splicing isoforms for
RTKN

Expression for RTKN Gene

mRNA expression in normal human tissues for RTKN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RTKN Gene

This gene is overexpressed in Liver (5.7) and Brain - Spinal cord (cervical c-1) (4.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RTKN Gene

SOURCE GeneReport for Unigene cluster for RTKN Gene Hs.192854

mRNA Expression by UniProt/SwissProt for RTKN Gene

Q9BST9-RTKN_HUMAN
Tissue specificity: Highly expressed in prostate, moderately in kidney, heart, brain, spleen, testis, placenta, small intestine, pancreas, skeletal muscle and peripheral blood leukocytes, and weakly in ovary, colon and thymus. Weakly expressed in all normal cell lines tested. Overexpressed in various cancer cell lines.
genes like me logo Genes that share expressions with RTKN: view

In Situ Assay Products

Orthologs for RTKN Gene

This gene was present in the common ancestor of animals.

Orthologs for RTKN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RTKN 35
  • 99.7 (n)
  • 99.47 (a)
RTKN 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RTKN 35
  • 91 (n)
  • 90.59 (a)
RTKN 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RTKN 35
  • 92.13 (n)
  • 92.72 (a)
RTKN 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rtkn 35
  • 87.21 (n)
  • 86.86 (a)
Rtkn 16
Rtkn 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RTKN 36
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rtkn 35
  • 87.15 (n)
  • 88.17 (a)
lizard
(Anolis carolinensis)
Reptilia RTKN 36
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rtkn 35
  • 63.17 (n)
  • 62.53 (a)
zebrafish
(Danio rerio)
Actinopterygii RTKN (1 of 2) 36
  • 49 (a)
OneToMany
rtkn2b 36
  • 51 (a)
OneToMany
si:dkey-40c11.1 35
  • 62.06 (n)
  • 60.31 (a)
worm
(Caenorhabditis elegans)
Secernentea C07B5.4 36
  • 18 (a)
OneToMany
Species with no ortholog for RTKN:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RTKN Gene

ENSEMBL:
Gene Tree for RTKN (if available)
TreeFam:
Gene Tree for RTKN (if available)

Paralogs for RTKN Gene

Paralogs for RTKN Gene

Selected SIMAP similar genes for RTKN Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RTKN: view

Variants for RTKN Gene

Sequence variations from dbSNP and Humsavar for RTKN Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs917240 -- 74,429,729(-) ATTGC(C/T)GCCAG intron-variant
rs1001123 -- 74,432,696(-) CATTT(A/C)CTTCT intron-variant
rs1003729 -- 74,432,262(-) ACTTA(C/G)AAAAG intron-variant
rs1003730 -- 74,431,328(-) CTGCA(A/G)TGGGG intron-variant
rs2268418 -- 74,437,340(-) TAGTC(A/G)TGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RTKN Gene

Variant ID Type Subtype PubMed ID
dgv1199e1 CNV Complex 17122850
nsv458185 CNV Loss 19166990
nsv515851 CNV Loss 19592680
dgv4166n71 CNV Loss 21882294

Relevant External Links for RTKN Gene

HapMap Linkage Disequilibrium report
RTKN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RTKN Gene

Disorders for RTKN Gene

(2) Novoseek inferred disease relationships for RTKN Gene

Disease -log(P) Hits PubMed IDs
gastric cancer 16.9 1
metastasis 9.84 1
genes like me logo Genes that share disorders with RTKN: view

No data available for UniProtKB/Swiss-Prot for RTKN Gene

Publications for RTKN Gene

  1. The PDZ protein TIP-1 interacts with the Rho effector rhotekin and is involved in Rho signaling to the serum response element. (PMID: 10940294) Reynaud C. … Jalinot P. (J. Biol. Chem. 2000) 2 3 4 23
  2. Molecular cloning, expression characterization, and mapping of a novel putative inhibitor of rho GTPase activity, RTKN, to D2S145- D2S286. (PMID: 10873388) Fu Q. … Zhao S. (Genomics 2000) 3 4 23
  3. Rho/Rhotekin-mediated NF-kappaB activation confers resistance to apoptosis. (PMID: 15480428) Liu C.-A. … Chen J.-Y. (Oncogene 2004) 3 4 23
  4. Overexpression of rho effector rhotekin confers increased survival in gastric adenocarcinoma. (PMID: 15316142) Liu C.A. … Chen J.Y. (J. Biomed. Sci. 2004) 3 23
  5. Localization of the rhotekin gene RTKN on the physical maps of mouse chromosome 6 and human chromosome 2p13 and exclusion as a candidate for mnd2 and LGMD2B. (PMID: 9073523) Jang W. … Meisler M.H. (Genomics 1997) 2 3

Products for RTKN Gene

Sources for RTKN Gene

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