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RSRP1 Gene(Protein Coding)

Arginine/Serine-Rich Protein 1

GCID:
GC01M025242
GIFtS:
31
Genes Participants
UDN Logo

Aliases for RSRP1 Gene

Aliases for RSRP1 Gene

  • Arginine/Serine-Rich Protein 1 2 3 5
  • C1orf63 3 4
  • Chromosome 1 Open Reading Frame 63 2
  • UPF0471 Protein C1orf63 3
  • NPD014 3

External Ids for RSRP1 Gene

Previous HGNC Symbols for RSRP1 Gene

  • C1orf63

Previous GeneCards Identifiers for RSRP1 Gene

  • GC01M025569

Summaries for RSRP1 Gene

GeneCards Summary for RSRP1 Gene

RSRP1 (Arginine/Serine-Rich Protein 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RSRP1 Gene

Genomics for RSRP1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for RSRP1 Gene

Enhancers for RSRP1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RSRP1 on UCSC Golden Path with GeneCards custom track

Promoters for RSRP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RSRP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RSRP1 Gene

Chromosome:
1
Start:
25,242,237 bp from pter
End:
25,338,213 bp from pter
Size:
95,977 bases
Orientation:
Minus strand

Genomic View for RSRP1 Gene

Genes around RSRP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RSRP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RSRP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RSRP1 Gene

Proteins for RSRP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for RSRP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BUV0-RSRP1_HUMAN
    Recommended name:
    Arginine/serine-rich protein 1
    Protein Accession:
    Q9BUV0
    Secondary Accessions:
    • A8K917
    • Q49AA4
    • Q5TH71
    • Q9GZP6

    Protein attributes for RSRP1 Gene

    Size:
    290 amino acids
    Molecular mass:
    33613 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RSRP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RSRP1 Gene

Proteomics data for RSRP1 Gene at MOPED

Post-translational modifications for RSRP1 Gene

  • Ubiquitination at Lys 188
  • Modification sites at PhosphoSitePlus

Other Protein References for RSRP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RSRP1 Gene

Domains & Families for RSRP1 Gene

Protein Domains for RSRP1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RSRP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BUV0

UniProtKB/Swiss-Prot:

RSRP1_HUMAN :
  • Belongs to the RSRP family.
Family:
  • Belongs to the RSRP family.
genes like me logo Genes that share domains with RSRP1: view

No data available for Gene Families for RSRP1 Gene

Function for RSRP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for RSRP1 Gene

GenomeRNAi human phenotypes for RSRP1:
genes like me logo Genes that share phenotypes with RSRP1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RSRP1 Gene

Localization for RSRP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RSRP1 Gene

Pathways & Interactions for RSRP1 Gene

SuperPathways for RSRP1 Gene

PathCards logoMore details on SuperPathways for RSRP1
No Data Available

Gene Ontology (GO) - Biological Process for RSRP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RSRP1 Gene

Drugs & Compounds for RSRP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RSRP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for RSRP1 Gene

(4) REFSEQ mRNAs :
(414) Selected AceView cDNA sequences:
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RSRP1 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16
SP1: - - - - - - - - - - - -
SP2: - - -
SP3:
SP4: - - -
SP5:
SP6: - - - - - - - - - - - - -
SP7: - - - - -
SP8: - - - - - -
SP9: - -
SP10: -
SP11:

Relevant External Links for RSRP1 Gene

GeneLoc Exon Structure for
RSRP1
ECgene alternative splicing isoforms for
RSRP1

Expression for RSRP1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for RSRP1 Gene

mRNA expression in normal human tissues for RSRP1 Gene
mRNA expression by BioGPS for RSRP1 GenemRNA expression by GTEx for RSRP1 Gene
genes like me logo Genes that share expression patterns with RSRP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RSRP1 Gene

Orthologs for RSRP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RSRP1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia C1orf63 36
  • 72 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia C1orf63 36
  • 74 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia C1orf63 36
  • 53 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia D4Wsu53e 36
  • 75 (a)
 OneToOne
chimpanzee
(Pan troglodytes)
 Mammalia C1ORF63 36
  • 97 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves -- 36
  • 38 (a)
 OneToMany
-- 36
  • 52 (a)
 OneToMany
Species with no ortholog for RSRP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RSRP1 Gene

ENSEMBL:
Gene Tree for RSRP1 (if available)
TreeFam:
Gene Tree for RSRP1 (if available)

Paralogs for RSRP1 Gene

No data available for Paralogs for RSRP1 Gene

Variants for RSRP1 Gene

Sequence variations from dbSNP and Humsavar for RSRP1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs34619962 - 25,246,525(+) CGGGT(A/G)CACTG nc-transcript-variant, reference, missense
rs1043879 - 25,243,590(-) CAATG(A/G)AAAAC nc-transcript-variant, reference, missense, utr-variant-3-prime
rs11547 -- 25,244,339(+) ATAGT(A/G)CCTGT intron-variant, nc-transcript-variant
rs13565 -- 25,244,949(+) AGGCA(C/T)CATGC intron-variant, nc-transcript-variant
rs589993 -- 25,262,091(+) tcaag(C/T)gtatt intron-variant

Variation tolerance for RSRP1 Gene

Residual Variation Intolerance Score: 65% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.06; 68.81% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for RSRP1 Gene

Disorders for RSRP1 Gene

Relevant External Links for RSRP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RSRP1

No disorders were found for RSRP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RSRP1 Gene

Publications for RSRP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Elevated C1orf63 expression is correlated with CDK10 and predicts better outcome for advanced breast cancers: a retrospective study. (PMID: 26209438) Hong C.Q. … Cui Y.K. (BMC Cancer 2015) 3
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for RSRP1 Gene

Sources for RSRP1 Gene

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