Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RSPH10B Gene

Aliases for RSPH10B Gene

  • Radial Spoke Head 10 Homolog B 2 3 5
  • Radial Spoke Head 10 Homolog B (Chlamydomonas) 2

External Ids for RSPH10B Gene

Summaries for RSPH10B Gene

GeneCards Summary for RSPH10B Gene

RSPH10B (Radial Spoke Head 10 Homolog B) is a Protein Coding gene. An important paralog of this gene is RSPH10B2.

Additional gene information for RSPH10B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RSPH10B Gene

Genomics for RSPH10B Gene

Regulatory Elements for RSPH10B Gene

Enhancers for RSPH10B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H006007 1.2 ENCODE 6.2 -39.9 -39943 6 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ANKRD61 USP42 RNF216 C7orf26 EIF2AK1 PMS2 ZNF316 ZNF12 PMS2CL TNRC18
GH07H006103 1.5 FANTOM5 ENCODE 4.7 -134.8 -134751 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF12 USP42 C7orf26 EIF2AK1 ZNF316 RNU6-218P TNRC18 PMS2 CCZ1 RSPH10B
GH07H006014 1.2 Ensembl ENCODE 5.7 -45.7 -45710 3 PKNOX1 ZNF766 ELK1 ATF7 RUNX3 CAVIN1 JUNB ZNF592 MEF2D ATF4 EIF2AK1 ZNF12 RBAK PMS2 C7orf26 TNRC18 ZNF316 USP42 PMS2CL ENSG00000198580
GH07H005995 1 ENCODE 6 -25.1 -25101 1 PKNOX1 ARNT SIN3A FEZF1 GTF3C2 KLF7 FOS SP3 TSHZ1 ZNF518A ANKRD61 ZNF316 PMS2 C7orf26 EIF2AK1 ZNF12 PMS2CL USP42 RNF216 RSPH10B
GH07H006019 0.6 ENCODE 5.9 -49.3 -49337 1 ZNF217 SMARCE1 JUND POLR2A ZBTB33 NFE2 DPF2 ZNF18 EIF2AK1 RSPH10B CCZ1 SNORA80D ANKRD61
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RSPH10B on UCSC Golden Path with GeneCards custom track

Promoters for RSPH10B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000208160 -16 201

Genomic Location for RSPH10B Gene

Chromosome:
7
Start:
5,925,550 bp from pter
End:
5,970,684 bp from pter
Size:
45,135 bases
Orientation:
Minus strand

Genomic View for RSPH10B Gene

Genes around RSPH10B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RSPH10B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RSPH10B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RSPH10B Gene

Proteins for RSPH10B Gene

  • Protein details for RSPH10B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C881-R10B1_HUMAN
    Recommended name:
    Radial spoke head 10 homolog B
    Protein Accession:
    P0C881
    Secondary Accessions:
    • A6NMW7
    • Q86ST9
    • Q8NE68

    Protein attributes for RSPH10B Gene

    Size:
    870 amino acids
    Molecular mass:
    100635 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RSPH10B Gene

Post-translational modifications for RSPH10B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RSPH10B Gene

Domains & Families for RSPH10B Gene

Gene Families for RSPH10B Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RSPH10B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RSPH10B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RSPH10B: view

No data available for UniProtKB/Swiss-Prot for RSPH10B Gene

Function for RSPH10B Gene

Phenotypes for RSPH10B Gene

GenomeRNAi human phenotypes for RSPH10B:
genes like me logo Genes that share phenotypes with RSPH10B: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RSPH10B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RSPH10B Gene

Localization for RSPH10B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RSPH10B gene
Compartment Confidence
nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RSPH10B Gene

Pathways & Interactions for RSPH10B Gene

SuperPathways for RSPH10B Gene

No Data Available

Interacting Proteins for RSPH10B Gene

Gene Ontology (GO) - Biological Process for RSPH10B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RSPH10B Gene

Drugs & Compounds for RSPH10B Gene

No Compound Related Data Available

Transcripts for RSPH10B Gene

Unigene Clusters for RSPH10B Gene

Radial spoke head 10 homolog B (Chlamydomonas):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RSPH10B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RSPH10B Gene

No ASD Table

Relevant External Links for RSPH10B Gene

GeneLoc Exon Structure for
RSPH10B
ECgene alternative splicing isoforms for
RSPH10B

Expression for RSPH10B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RSPH10B Gene

mRNA differential expression in normal tissues according to GTEx for RSPH10B Gene

This gene is overexpressed in Testis (x24.0).

NURSA nuclear receptor signaling pathways regulating expression of RSPH10B Gene:

RSPH10B

SOURCE GeneReport for Unigene cluster for RSPH10B Gene:

Hs.442339
genes like me logo Genes that share expression patterns with RSPH10B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RSPH10B Gene

Orthologs for RSPH10B Gene

This gene was present in the common ancestor of chordates.

Orthologs for RSPH10B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC738574 33
  • 98.74 (n)
-- 34
  • 98 (a)
OneToMany
dog
(Canis familiaris)
Mammalia RSPH10B 33
  • 81.43 (n)
-- 34
  • 76 (a)
OneToMany
cow
(Bos Taurus)
Mammalia RSPH10B 33
  • 79.6 (n)
-- 34
  • 74 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Rsph10b 33
  • 76.91 (n)
mouse
(Mus musculus)
Mammalia Rsph10b 33 34
  • 76.49 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 67 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves RSPH10B 33
  • 60.81 (n)
-- 34
  • 46 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 59 (a)
ManyToMany
-- 34
  • 49 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia rsph10b 33
  • 59.42 (n)
zebrafish
(Danio rerio)
Actinopterygii zgc:153062 33
  • 56.75 (n)
RSPH10B 34
  • 42 (a)
OneToMany
Species where no ortholog for RSPH10B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RSPH10B Gene

ENSEMBL:
Gene Tree for RSPH10B (if available)
TreeFam:
Gene Tree for RSPH10B (if available)

Paralogs for RSPH10B Gene

Paralogs for RSPH10B Gene

(4) SIMAP similar genes for RSPH10B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RSPH10B: view

Variants for RSPH10B Gene

Sequence variations from dbSNP and Humsavar for RSPH10B Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000097732 -- 5,954,349(+) GGCCA(A/G)GCTGG intron-variant
rs1000298679 -- 5,934,324(+) ATCAT(A/G)AATGG intron-variant
rs1000311292 -- 5,972,460(+) CAAGG(C/T)CAGTA nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1000430281 -- 5,971,577(+) TGTTC(C/T)AGAGA nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1000585458 -- 5,937,566(+) ACGCC(C/G)GGCTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RSPH10B Gene

Variant ID Type Subtype PubMed ID
dgv1864e212 CNV loss 25503493
dgv1865e212 CNV loss 25503493
dgv1866e212 CNV loss 25503493
dgv1867e212 CNV loss 25503493
dgv6241n100 CNV gain 25217958
dgv6243n100 CNV loss 25217958
esv2752174 CNV gain 17911159
esv2759504 CNV loss 17122850
esv2762647 CNV gain 21179565
esv33385 CNV gain 17666407
esv3571591 CNV loss 25503493
esv3571605 CNV loss 25503493
nsv1017061 CNV loss 25217958
nsv1034916 CNV gain 25217958
nsv1074069 CNV deletion 25765185
nsv1077484 CNV duplication 25765185
nsv1141527 CNV duplication 24896259
nsv1147398 CNV duplication 26484159
nsv1153955 CNV duplication 26484159
nsv436904 CNV insertion 17901297
nsv7392 OTHER inversion 18451855
nsv8037 CNV gain 18304495
nsv8040 CNV gain 18304495
nsv830892 CNV loss 17160897
nsv830894 CNV loss 17160897
nsv966754 CNV duplication 23825009
nsv970789 CNV duplication 23825009

Variation tolerance for RSPH10B Gene

Gene Damage Index Score: 5.23; 70.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RSPH10B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RSPH10B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RSPH10B Gene

Disorders for RSPH10B Gene

Relevant External Links for RSPH10B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RSPH10B

No disorders were found for RSPH10B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RSPH10B Gene

Publications for RSPH10B Gene

  1. Radial spoke proteins of Chlamydomonas flagella. (PMID: 16507594) Yang P … Witman GB (Journal of cell science 2006) 2 3 60
  2. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. (PMID: 27173435) Boldt K … UK10K Rare Diseases Group (Nature communications 2016) 3 60
  3. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H … Espeseth AS (Cell host & microbe 2008) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60

Products for RSPH10B Gene

Sources for RSPH10B Gene

Content
Loading form....