CLIP1 Gene
protein-coding GIFtS : 53
GC12M121322
CAP-GLY domain containing linker protein 1 (Previous name: restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: RSN )
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Aliases & Descriptions for CLIP1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CLIP 1 , 2 CLIP-170 1 , 2 , 3 CLIP170 1 , 2 CYLN1 1 , 2 , 3 MGC131604 2 RSN 2 , 3 Restin 3 restin 2
Descriptions CAP-GLY domain containing linker protein 1 2 Cytoplasmic linker protein 1 3 Cytoplasmic linker protein 170 alpha-2 3 Reed-Steinberg cell-expressed intermediate filament-associated protein 2 Reed-Sternberg intermediate filament-associated protein 3 cytoplasmic linker 1 2 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 1 , 2
Search outside databases for aliases for CLIP1 genePrevious GC identifer: GC12M121205
Summaries for CLIP1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: CLIP1_HUMAN, P30622 Function : Seems to be a intermediate filament associated protein that links endocytic vesicles tomicrotubules
Gene Wiki entry for CLIP1
Genomic Location for CLIP1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q24.3 Ensembl cytogenetic band: 12q24.31 HGNC cytogenetic band: 12q24.3 CLIP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M121322:
(about GC identifiers )
Start:
121,321,934 bp from pter
End:
121,473,069 bp from pter
Size:
151,136 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000012.10 NT_009755.18 Proteins for CLIP1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CLIP1_HUMAN, P30622 (See
protein sequence )Recommended Name: CAP-Gly domain-containing linker protein 1 Size : 1427 amino acids; 160990 Da
Subcellular location : Cytoplasm. Cytoplasm, cytoskeleton. Note=Associated with the cytoskeleton
PDB structures from and Proteopedia : 2CP5 (3D)
 2CP6 (3D)
 2E3H (3D)
 2E3I (3D)
 2E4H (3D)
 2HQH (3D)
 2QK0 (3D)
 3E2U (3D)
 Alternative splicing : 2 isoforms : P30622-1 P30622-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002947.1 NP_937883.1 ENSEMBL proteins: ENSP00000303585 ENSP00000351665 ENSP00000355314 ENSP00000376252 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CLIP1: Assays for CLIP1:
Protein
Domains/ Families for CLIP1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P30622 ProtoNet protein and cluster: P30622
2 Blocks protein families : IPB000938 CAP-Gly domain IPB001878 C2HC-type zinc-finger signature UniProtKB/Swiss-Prot: CLIP1_HUMAN, P30622 Similarity : Contains 2 CAP-Gly domains
Gene Function for CLIP1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_198240 Applied Biosystems Silencer ® siRNAs for CLIP1 Sigma-Aldrich siRNA for CLIP1 Sigma-Aldrich shRNA Panels and shRNA for CLIP1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002956                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002956                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002956  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002956 UniProtKB/Swiss-Prot: CLIP1_HUMAN, P30622 Function : Seems to be a intermediate filament associated protein that links endocytic vesicles tomicrotubules
2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Clip1) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for CLIP1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for CLIP1 5/108 Interacting proteins for CLIP1 (ENSP00000351665 3 P30622 2 ) via UniProtKB, MINT, and/or STRING (see all 108
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
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Drugs & Compounds for CLIP1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CLIP1 5 Novoseek chemical compound relationships for CLIP1 gene
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Transcripts for CLIP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_198240 Sigma-Aldrich siRNA for CLIP1 Sigma-Aldrich shRNA Panels and shRNA for CLIP1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002956 NM_198240
REFSEQ mRNAs for CLIP1 gene (2 alternative transcripts): NM_002956.2 NM_198240.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002956 NM_198240
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002956                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002956                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002956  
Additional cDNA sequence: AB209115.1 AF045652.1 AF045653.1 AK126990.1 AY563000.1 BC047895.1 BC062543.1 BC114213.1 BC117209.1 BC126305.1 M97501.1 X64838.1
21 DOTS entries : DT.217772 DT.101983195 DT.99941429 DT.95371234 DT.97822056 DT.95371227 DT.92068744 DT.95305617 DT.121159268 DT.121159305 DT.304362 DT.97845116 DT.100788755 DT.91721355 DT.91749921 DT.91885310 DT.100788754 DT.86841094 DT.95156652 DT.92012465 DT.99975989
24/283 AceView cDNA sequences (see all 283
):BU192156 BM856968 BU788009 BX646973 AI913555 NM_002956 CA395393 BQ278921 AA307304 BF431741 AL596826 BX477400 NM_198240 AA069706 AW950144 CA314875 H12584 BP364071 AA313570 AL713517 BC047895 AI583719 BU784341 BE349309
highest scoring ESTs for CLIP1 :X64838 AL603324 AL713517 AW008377 AW270831 AW294721 AW451194 BF849789 M97501 AA069706
Unigene Cluster for CLIP1: CAP-GLY domain containing linker protein 1 Hs.524809 [show with all ESTs ] Unigene Representative Sequence: NM_002956 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for CLIP1 (see all 9
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17a · 17b ^ 18 ^ 19 ^ SP1 :           -     -       -                           -       SP2 :           -     -       -   -                         -       SP3 :           -   -   -                                       SP4 :                                                     SP5 :                                                    
ExUns: 20 ^ 21 ^ 22a · 22b ^ 23 ^ 24a · 24b ^ 25 ^ 26a · 26b ^ 27a · 27b · 27c · 27d SP1 :     -         -   -               SP2 :     -         -   -               SP3 :                             SP4 :             -   -   -             SP5 :                            
About this scheme ECgene alternative splicing isoforms for CLIP1 4 Ensembl transcripts including schematic representations : ENST00000302528
ENST00000358808
ENST00000361654
ENST00000392458
Expression for CLIP1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CLIP1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CLIP1 1 / 2 / 3
11 probe-sets matching CLIP1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAAAGCAGTASOURCE GeneReport for Unigene cluster: Hs.524809 UniProtKB/Swiss-Prot: CLIP1_HUMAN, P30622 Tissue specificity : Highly expressed in the Reed-Sternberg cells of Hodgkin's disease
Orthologs for CLIP1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CLIP1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for CLIP1 ENSEMBL Gene Tree for CLIP1 Paralogs for CLIP1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CLIP1 gene CLIP2 2 TBCB 2
SNPs/Variants for CLIP1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CLIP1 (up to first 250kb)
Disorders & Mutations for CLIP1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 179838 5 Novoseek disease relationships for CLIP1 gene
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Medical News for CLIP1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CLIP1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/130 PubMed articles for CLIP1 gene (see all 130
): Localization of the gene (RSN) coding for restin, a marker for Reed-Sternberg cells in Hodgkin's disease, to human chromosome band 12q24.3 and YAC cloning of the locus. (PubMed id 8222754) 1, 2, 3 Hilliker C....Van den Berghe H. (1994) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243) 3, 4 Beausoleil S.A.... Gygi S.P. (2006) Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220) 3, 4 Nousiainen M.... Koerner R. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Global phosphoproteome of HT-29 human colon adenocarcinoma cells. (PubMed id 16083285) 3, 4 Kim J.-E.... White F.M. (2005) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 3, 4 Beausoleil S.A....Gygi S.P. (2004) Restin: a novel intermediate filament-associated protein highly expressed in the Reed-Sternberg cells of Hodgkin's disease. (PubMed id 1600942) 3, 4 Bilbe G.... Shipman R. (1992) CLIP-170 links endocytic vesicles to microtubules. (PubMed id 1356075) 3, 4 Pierre P.... Kreis T.E. (1992) CLIP-170 facilitates the formation of kinetochore-microtubule attachments. (PubMed id 16362039) 1, 3 Tanenbaum M.E....Medema R.H. (2006) Interactions between CLIP-170, tubulin, and microtubules: implications for the mechanism of Clip-170 plus-end tracking behavior. (PubMed id 16120651) 1, 3 Folker E.S....Goodson H.V. (2005)
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Genome Databases showing CLIP1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CLIP1
(According to HUGE )
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Specialized Databases showing CLIP1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CLIP1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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