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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RSG1 Gene

protein-coding   GIFtS: 44
GCID: GC01M016557

REM2 And RAB-Like Small GTPase 1

(Previous name: chromosome 1 open reading frame 89)
(Previous symbol: C1orf89)
  Search for RSG1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
REM2 And RAB-Like Small GTPase 11 2
C1orf891 2 3
Rem/Rab-Similar GTPase 11 2
Chromosome 1 Open Reading Frame 891
Miro Domain-Containing Protein C1orf892
REM2- And Rab-Like Small GTPase 12

External Ids:    HGNC: 281271   Entrez Gene: 793632   Ensembl: ENSG000001328817   UniProtKB: Q9BU203   

Export aliases for RSG1 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for RSG1 Gene: 
RSG1 (REM2 and RAB-like small GTPase 1) is a protein-coding gene. GO annotations related to this gene include GTP binding.

UniProtKB/Swiss-Prot: RSG1_HUMAN, Q9BU20
Function: Potential effector of the planar cell polarity signaling pathway. Plays a role in targeted membrane
trafficking most probably at the level of vesicle fusion with membranes. Involved in cilium biogenesis by
regulating the transport of cargo proteins to the basal body and to the apical tips of cilia. More generally
involved in exocytosis in secretory cells (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.2  NT_004610.19  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for RSG1
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for RSG1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RSG1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.13   Ensembl cytogenetic band:  1p36.13   HGNC cytogenetic band: 1p36.13

RSG1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RSG1 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M016557:  view genomic region     (about GC identifiers)

Start:
16,558,182 bp from pter      End:
16,563,659 bp from pter
Size:
5,478 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RSG1_HUMAN, Q9BU20 (See protein sequence)
Recommended Name: REM2- and Rab-like small GTPase 1  
Size: 258 amino acids; 28498 Da
Subcellular location: Cytoplasm, cytoskeleton, cilium basal body (By similarity)
Secondary accessions: Q5TEV7

Explore the universe of human proteins at neXtProt for RSG1: NX_Q9BU20

Explore proteomics data for RSG1 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9BU20

  • RSG1 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    RSG1 Protein Expression
    REFSEQ proteins: NP_112169.2  
    ENSEMBL proteins: 
     ENSP00000364749   ENSP00000406390  

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    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005737cytoplasm IEA--
    GO:0005929cilium IEA--
    GO:0005932microtubule basal body ISS--

    RSG1 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    3 InterPro protein domains:
     IPR027417 P-loop_NTPase
     IPR013684 MIRO-like
     IPR001806 Small_GTPase

    Graphical View of Domain Structure for InterPro Entry Q9BU20

    ProtoNet protein and cluster: Q9BU20

    UniProtKB/Swiss-Prot: RSG1_HUMAN, Q9BU20
    Similarity: Belongs to the small GTPase superfamily. Rab family


    RSG1 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RSG1_HUMAN, Q9BU20
    Function: Potential effector of the planar cell polarity signaling pathway. Plays a role in targeted membrane
    trafficking most probably at the level of vesicle fusion with membranes. Involved in cilium biogenesis by
    regulating the transport of cargo proteins to the basal body and to the apical tips of cilia. More generally
    involved in exocytosis in secretory cells (By similarity)

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005525GTP binding IEA--
         
    RSG1 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for RSG1:
     Decreased Wnt reporter activit 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RSG1

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for RSG1 (Q9BU203 ENSP000003647494) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FUZQ9BT043, ENSP000003133094I2D: score=4 STRING: ENSP00000313309
    MSLNENSP000003723134STRING: ENSP00000372313
    TMEM14CENSP000002295634STRING: ENSP00000229563
    About this table

    Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006887exocytosis IEA--
    GO:0007264small GTPase mediated signal transduction IEA--
    GO:0015031protein transport IEA--
    GO:0017157regulation of exocytosis ISS--
    GO:0031338regulation of vesicle fusion ISS--

    RSG1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RSG1

    Search CenterWatch for drugs/clinical trials and news about RSG1

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RSG1 gene: 
    NM_030907.3  

    Unigene Cluster for RSG1:

    REM2 and RAB-like small GTPase 1
    Hs.546430  [show with all ESTs]
    Unigene Representative Sequence: NM_030907
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000375599(uc001ayd.3) ENST00000434014
    miRNA
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    Inhib. RNA
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    Additional mRNA sequence: 

    BC002946.2 BC008702.1 

    1 DOTS entry:

    DT.75105204 

    21 AceView cDNA sequences:

    AI763332 NM_030907 BM806211 BM972129 BC008702 BC002946 CR594894 BG397004 
    AL559024 BX369457 CD518311 BX092154 BE395771 AI744915 BM695045 CD674700 
    BM987595 BF026514 AW905080 W02174 W32586 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for RSG1    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5
    SP1:                                    
    SP2:                    -               


    ECgene alternative splicing isoforms for RSG1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RSG1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAGGGAGGT
    RSG1 Expression
    About this image


    See RSG1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RSG1

    SOURCE GeneReport for Unigene cluster: Hs.546430
        SABiosciences Custom PCR Arrays for RSG1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RSG1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for RSG1 gene from 3/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rsg11 , 5 RIKEN cDNA 6330545A04 gene5
    REM2 and RAB-like small GTPase 11
    84.95(n)1
    89.11(a)1
      4 (73.47 cM)5
    761661  NM_001081174.21  NP_001074643.11 
     1412139565 
    lizard
    (Anolis carolinensis)
    Reptilia RSG16
    Uncharacterized protein
    58(a)
    1 ↔ 1
    GL345040.1(21-4195)
    zebrafish
    (Danio rerio)
    Actinopterygii rsg11 REM2 and RAB-like small GTPase 1 63.31(n)
    56.3(a)
      447911  NM_001004649.1  NP_001004649.1 


    ENSEMBL Gene Tree for RSG1 (if available)
    TreeFam Gene Tree for RSG1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/184 SNPs in RSG1 are shown (see all 184)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs112607091,2
    C,F,A,H--16557691(+) catggC/Tggttg 1 -- int15Minor allele frequency- T:0.20NA 10
    rs710032611,2
    C--16557823(-) TTTTT-/C/T   
      CT
    /TTC
    TCCAG
    3 -- int1 cds11NA 2
    rs127382611,2
    C--16557824(+) CTGGAG/AAAAAA 1 -- int11Minor allele frequency- A:0.50NA 2
    rs75413691,2
    C,F,A,H--16557864(+) GCGACG/TGGCTT 1 -- int110Minor allele frequency- T:0.10NS NA WA 1040
    rs1864853141,2
    --16557876(+) ACTCCC/TGGACT 1 -- int10--------
    rs127386331,2
    C,F,H--16558056(+) CTGACT/ACCCTA 1 -- int18Minor allele frequency- A:0.01NS EA NA 410
    rs124108701,2
    H--16558120(+) GAGCAA/GAGCCC 1 -- int10--------
    rs1467972371,2
    C--16558142(+) TCACCC/TCCTCC 1 -- int10--------
    rs1916867941,2
    --16558173(+) AACGAA/TCACGT 1 -- int10--------
    rs1479529021,2
    C--16558327(+) GGCCAC/TGGGAG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for RSG1 (16558182 - 16563659 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for RSG1:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv3520CNV Insertion18451855
    nsv833869CNV Loss17160897
    dgv174n71CNV Loss21882294
    nsv870978CNV Loss21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RSG1 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with RSG1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The planar cell polarity effector Fuz is essential fo r targeted membrane trafficking, ciliogenesis and mouse embryonic development. (PubMed id 19767740)1, 3 Gray R.S....Finnell R.H. (2009)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    3. Toward an understanding of the protein interaction net work of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (2011)
    4. Genome-wide association study identifies loci influenc ing concentrations of liver enzymes in plasma. (PubMed id 22001757)1 Chambers J.C....Kooner J.S. (2011)
    5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    6. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (2006)
    7. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (2005)
    8. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 79363 HGNC: 28127 AceView: MGC10731 Ensembl:ENSG00000132881 euGenes: HUgn79363
    ECgene: RSG1 H-InvDB: RSG1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RSG1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RSG1 gene:
    Search GeneIP for patents involving RSG1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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