Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RSBN1L Gene

Aliases for RSBN1L Gene

  • Round Spermatid Basic Protein 1-Like 2 3

External Ids for RSBN1L Gene

Summaries for RSBN1L Gene

GeneCards Summary for RSBN1L Gene

RSBN1L (Round Spermatid Basic Protein 1-Like) is a Protein Coding gene. An important paralog of this gene is RSBN1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RSBN1L Gene

Genomics for RSBN1L Gene

Genomic Location for RSBN1L Gene

Start:
77,696,426 bp from pter
End:
77,783,022 bp from pter
Size:
86,597 bases
Orientation:
Plus strand

Genomic View for RSBN1L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RSBN1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RSBN1L Gene

Regulatory Elements for RSBN1L Gene

Proteins for RSBN1L Gene

  • Protein details for RSBN1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PCB5-RSBNL_HUMAN
    Recommended name:
    Round spermatid basic protein 1-like protein
    Protein Accession:
    Q6PCB5
    Secondary Accessions:
    • C9K0P1
    • Q6ZS58
    • Q6ZVI9
    • Q86X48

    Protein attributes for RSBN1L Gene

    Size:
    846 amino acids
    Molecular mass:
    94870 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH46353.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=BAC85872.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for RSBN1L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RSBN1L Gene

Proteomics data for RSBN1L Gene at MOPED

Post-translational modifications for RSBN1L Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys548

Other Protein References for RSBN1L Gene

No data available for DME Specific Peptides for RSBN1L Gene

Domains for RSBN1L Gene

Protein Domains for RSBN1L Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

RSBNL_HUMAN
Family:
  • Belongs to the round spermatid basic protein 1 family.:
    • Q6PCB5
genes like me logo Genes that share domains with RSBN1L: view

No data available for Gene Families for RSBN1L Gene

Function for RSBN1L Gene

Phenotypes for RSBN1L Gene

GenomeRNAi human phenotypes for RSBN1L:
genes like me logo Genes that share phenotypes with RSBN1L: view

miRNA for RSBN1L Gene

miRTarBase miRNAs that target RSBN1L

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for RSBN1L Gene

Localization for RSBN1L Gene

Subcellular locations from UniProtKB/Swiss-Prot for RSBN1L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RSBN1L Gene COMPARTMENTS Subcellular localization image for RSBN1L gene
Compartment Confidence
nucleus 3
plasma membrane 3
cytosol 2

Gene Ontology (GO) - Cellular Components for RSBN1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with RSBN1L: view

Pathways for RSBN1L Gene

SuperPathways for RSBN1L Gene

No Data Available

Gene Ontology (GO) - Biological Process for RSBN1L Gene

None

No data available for Pathways by source for RSBN1L Gene

Transcripts for RSBN1L Gene

Unigene Clusters for RSBN1L Gene

Round spermatid basic protein 1-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RSBN1L Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c
SP1: -
SP2: - -
SP3:

Relevant External Links for RSBN1L Gene

GeneLoc Exon Structure for
RSBN1L
ECgene alternative splicing isoforms for
RSBN1L

Expression for RSBN1L Gene

mRNA expression in normal human tissues for RSBN1L Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RSBN1L Gene

SOURCE GeneReport for Unigene cluster for RSBN1L Gene Hs.592289

genes like me logo Genes that share expressions with RSBN1L: view

Orthologs for RSBN1L Gene

This gene was present in the common ancestor of animals.

Orthologs for RSBN1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RSBN1L 36
  • 99.64 (n)
  • 99.64 (a)
RSBN1L 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RSBN1L 36
  • 92.17 (n)
  • 91.78 (a)
RSBN1L 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RSBN1L 36
  • 94.51 (n)
  • 94.92 (a)
RSBN1L 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rsbn1l 36
  • 85.62 (n)
  • 82.4 (a)
Rsbn1l 16
Rsbn1l 37
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RSBN1L 37
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RSBN1L 37
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rsbn1l 36
  • 84.83 (n)
  • 83.25 (a)
chicken
(Gallus gallus)
Aves RSBN1L 36
  • 81.94 (n)
  • 81.59 (a)
RSBN1L 37
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RSBN1L 37
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rsbn1l 36
  • 72.61 (n)
  • 72.46 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10600 37
  • 16 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea dpy-21 37
  • 11 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8474 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.789 37
  • 54 (a)
OneToMany
Species with no ortholog for RSBN1L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for RSBN1L Gene

ENSEMBL:
Gene Tree for RSBN1L (if available)
TreeFam:
Gene Tree for RSBN1L (if available)

Paralogs for RSBN1L Gene

Paralogs for RSBN1L Gene

Selected SIMAP similar genes for RSBN1L Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with RSBN1L: view

Variants for RSBN1L Gene

Sequence variations from dbSNP and Humsavar for RSBN1L Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs929375 -- 77,752,725(-) TCATG(G/T)GTGTG intron-variant
rs2009034 -- 77,742,182(-) TGTGT(A/G)TTTTT intron-variant
rs2040952 -- 77,778,396(-) TACTT(C/T)TAAGA missense, reference
rs2040953 -- 77,741,161(-) acaaa(C/T)acaaa intron-variant
rs2108029 -- 77,701,171(-) TTGTT(G/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RSBN1L Gene

Variant ID Type Subtype PubMed ID
nsv831039 CNV Gain 17160897
nsv365896 CNV Insertion 16902084

Relevant External Links for RSBN1L Gene

HapMap Linkage Disequilibrium report
RSBN1L

Disorders for RSBN1L Gene

Relevant External Links for RSBN1L

Genetic Association Database (GAD)
RSBN1L
genes like me logo Genes that share disorders with RSBN1L: view

No data available for UniProtKB/Swiss-Prot for RSBN1L Gene

Publications for RSBN1L Gene

  1. New loci associated with kidney function and chronic kidney disease. (PMID: 20383146) KAPttgen A. … Fox C.S. (Nat. Genet. 2010) 3 49
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for RSBN1L Gene

Sources for RSBN1L Gene

Back to Top

Content