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Aliases for RSBN1 Gene

Aliases for RSBN1 Gene

  • Round Spermatid Basic Protein 1 2 3
  • ROSBIN 3

External Ids for RSBN1 Gene

Previous GeneCards Identifiers for RSBN1 Gene

  • GC01M114019
  • GC01M114105
  • GC01M114304
  • GC01M112162

Summaries for RSBN1 Gene

GeneCards Summary for RSBN1 Gene

RSBN1 (Round Spermatid Basic Protein 1) is a Protein Coding gene. An important paralog of this gene is RSBN1L.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RSBN1 Gene

Genomics for RSBN1 Gene

Regulatory Elements for RSBN1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RSBN1 Gene

113,761,832 bp from pter
113,812,476 bp from pter
50,645 bases
Minus strand

Genomic View for RSBN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RSBN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RSBN1 Gene

Proteins for RSBN1 Gene

  • Protein details for RSBN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Round spermatid basic protein 1
    Protein Accession:
    Secondary Accessions:
    • A8K937
    • Q6AI21
    • Q8TC33
    • Q9HA80
    • Q9NUP6

    Protein attributes for RSBN1 Gene

    802 amino acids
    Molecular mass:
    90072 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH26155.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA92075.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB13974.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAH10493.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAH10493.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305}; Sequence=CAH72507.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAI19067.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for RSBN1 Gene


neXtProt entry for RSBN1 Gene

Proteomics data for RSBN1 Gene at MOPED

Post-translational modifications for RSBN1 Gene

Other Protein References for RSBN1 Gene

No data available for DME Specific Peptides for RSBN1 Gene

Domains for RSBN1 Gene

Protein Domains for RSBN1 Gene


Suggested Antigen Peptide Sequences for RSBN1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Q5VWQ0
  • Belongs to the round spermatid basic protein 1 family.
genes like me logo Genes that share domains with RSBN1: view

No data available for Gene Families for RSBN1 Gene

Function for RSBN1 Gene

Gene Ontology (GO) - Molecular Function for RSBN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with RSBN1: view

Phenotypes for RSBN1 Gene

GenomeRNAi human phenotypes for RSBN1:
genes like me logo Genes that share phenotypes with RSBN1: view

Animal Model Products

miRNA for RSBN1 Gene

miRTarBase miRNAs that target RSBN1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RSBN1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RSBN1 Gene

Localization for RSBN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RSBN1 Gene

Subcellular locations from

Jensen Localization Image for RSBN1 Gene COMPARTMENTS Subcellular localization image for RSBN1 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RSBN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with RSBN1: view

Pathways for RSBN1 Gene

SuperPathways for RSBN1 Gene

No Data Available

Interacting Proteins for RSBN1 Gene

Gene Ontology (GO) - Biological Process for RSBN1 Gene


No data available for Pathways by source for RSBN1 Gene

Transcripts for RSBN1 Gene

Unigene Clusters for RSBN1 Gene

Round spermatid basic protein 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RSBN1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RSBN1 Gene

No ASD Table

Relevant External Links for RSBN1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RSBN1 Gene

mRNA expression in normal human tissues for RSBN1 Gene

Protein differential expression in normal tissues for RSBN1 Gene

This gene is overexpressed in Adrenal (15.8), Adipocyte (12.5), Lung (8.8), and Peripheral blood mononuclear cells (8.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RSBN1 Gene

SOURCE GeneReport for Unigene cluster for RSBN1 Gene Hs.486285

genes like me logo Genes that share expressions with RSBN1: view

Expression partners for RSBN1 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RSBN1 Gene

Orthologs for RSBN1 Gene

This gene was present in the common ancestor of animals.

Orthologs for RSBN1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia RSBN1 35
  • 95.55 (n)
  • 95.51 (a)
RSBN1 36
  • 95 (a)
(Canis familiaris)
Mammalia RSBN1 35
  • 95.71 (n)
  • 96.63 (a)
RSBN1 36
  • 96 (a)
(Mus musculus)
Mammalia Rsbn1 35
  • 93.37 (n)
  • 95.09 (a)
Rsbn1 16
Rsbn1 36
  • 94 (a)
(Pan troglodytes)
Mammalia RSBN1 35
  • 99.71 (n)
  • 99.88 (a)
RSBN1 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Rsbn1 35
  • 93.49 (n)
  • 95.34 (a)
(Monodelphis domestica)
Mammalia RSBN1 36
  • 81 (a)
(Ornithorhynchus anatinus)
Mammalia RSBN1 36
  • 90 (a)
(Gallus gallus)
Aves RSBN1 35
  • 81.59 (n)
  • 86.5 (a)
RSBN1 36
  • 85 (a)
(Anolis carolinensis)
Reptilia RSBN1 36
  • 73 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia rsbn1 35
  • 72.77 (n)
  • 79.35 (a)
(Danio rerio)
Actinopterygii LOC100330644 35
  • 67.04 (n)
  • 73.53 (a)
RSBN1 36
  • 56 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10600 36
  • 16 (a)
(Caenorhabditis elegans)
Secernentea dpy-21 36
  • 11 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.789 36
  • 55 (a)
Species with no ortholog for RSBN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RSBN1 Gene

Gene Tree for RSBN1 (if available)
Gene Tree for RSBN1 (if available)

Paralogs for RSBN1 Gene

Paralogs for RSBN1 Gene

Selected SIMAP similar genes for RSBN1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RSBN1: view

Variants for RSBN1 Gene

Sequence variations from dbSNP and Humsavar for RSBN1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs998315 -- 113,805,534(+) GTGCA(C/T)AGCAG intron-variant
rs1217375 -- 113,804,282(-) CTTTC(C/T)TCTTT intron-variant
rs1217376 -- 113,804,127(-) ttttt(G/T)ttttt intron-variant
rs1217377 -- 113,803,128(-) aagtg(A/G)aagaa intron-variant
rs1217378 -- 113,802,796(-) gctgg(A/G)ggtga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RSBN1 Gene

Variant ID Type Subtype PubMed ID
esv23869 CNV Loss 19812545
nsv831093 CNV Loss 17160897
nsv820192 CNV Loss 19587683
esv2461577 CNV Deletion 19546169

Relevant External Links for RSBN1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RSBN1 Gene

Disorders for RSBN1 Gene

Relevant External Links for RSBN1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for RSBN1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for RSBN1 Gene

Publications for RSBN1 Gene

  1. PTPN22 Trp620 explains the association of chromosome 1p13 with type 1 diabetes and shows a statistical interaction with HLA class II genotypes. (PMID: 18305142) Smyth D.J. … Todd J.A. (Diabetes 2008) 3 23 48
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Variants in TNFAIP3, STAT4, and C12orf30 loci associated with multiple autoimmune diseases are also associated with juvenile idiopathic arthritis. (PMID: 19565500) Prahalad S. … Jorde L.B. (Arthritis Rheum. 2009) 3 48
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48

Products for RSBN1 Gene

Sources for RSBN1 Gene

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