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Aliases for RSBN1 Gene

Aliases for RSBN1 Gene

  • Round Spermatid Basic Protein 1 2 3 5
  • ROSBIN 3

External Ids for RSBN1 Gene

Previous GeneCards Identifiers for RSBN1 Gene

  • GC01M114019
  • GC01M114105
  • GC01M114304
  • GC01M112162

Summaries for RSBN1 Gene

GeneCards Summary for RSBN1 Gene

RSBN1 (Round Spermatid Basic Protein 1) is a Protein Coding gene. An important paralog of this gene is RSBN1L.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RSBN1 Gene

Genomics for RSBN1 Gene

Regulatory Elements for RSBN1 Gene

Enhancers for RSBN1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F114715 0.4 ENCODE 40.6 -904.0 -903966 2.4 HDGF ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A YBX1 DMAP1 YY1 RSBN1 TRIM33 OLFML3 SIKE1 NGF DENND2C CSDE1 ENSG00000228035 TSPAN2 NRAS
GH01F113869 0.2 ENCODE 37.5 -60.7 -60703 7.6 HDGF PKNOX1 ATF1 YBX1 YY1 ZNF121 GATA2 CBX5 ZNF143 ZNF207 RSBN1 AP4B1 PHTF1 DCLRE1B ENSG00000231128 HIPK1 HIPK1-AS1 LOC100421402 PTPN22 TRIM33
GH01F112934 1.1 Ensembl ENCODE 36.2 +876.0 875953 4.2 ARNT ARID4B ZNF2 FOS REST TBX21 KAT8 MEF2D MIER3 ZNF610 LRIG2 LOC100421402 RSBN1 SLC16A1 AKR7A2P1 SLC16A1-AS1
GH01F113216 0.5 Ensembl ENCODE 31.4 +594.2 594190 4.0 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 RSBN1 LOC100421402 LRIG2 MAGI3 LOC100996251 GC01P113218 LOC643441
GH01F113779 1.7 FANTOM5 Ensembl ENCODE 28.3 +29.4 29375 7.0 HDGF HDAC1 PKNOX1 ATF1 ARNT FEZF1 ELK1 ZNF366 ETV6 CREM RSBN1 PHTF1 ENSG00000231128 AP4B1 LOC100421402 MAGI3 PTPN22 HIPK1 PIR59903
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RSBN1 on UCSC Golden Path with GeneCards custom track

Promoters for RSBN1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000166284 1176 3801 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for RSBN1 Gene

Chromosome:
1
Start:
113,761,832 bp from pter
End:
113,812,476 bp from pter
Size:
50,645 bases
Orientation:
Minus strand

Genomic View for RSBN1 Gene

Genes around RSBN1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RSBN1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RSBN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RSBN1 Gene

Proteins for RSBN1 Gene

  • Protein details for RSBN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VWQ0-RSBN1_HUMAN
    Recommended name:
    Round spermatid basic protein 1
    Protein Accession:
    Q5VWQ0
    Secondary Accessions:
    • A8K937
    • Q6AI21
    • Q8TC33
    • Q9HA80
    • Q9NUP6

    Protein attributes for RSBN1 Gene

    Size:
    802 amino acids
    Molecular mass:
    90072 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH26155.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA92075.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB13974.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAH10493.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAH10493.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305}; Sequence=CAH72507.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAI19067.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for RSBN1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RSBN1 Gene

Post-translational modifications for RSBN1 Gene

Other Protein References for RSBN1 Gene

No data available for DME Specific Peptides for RSBN1 Gene

Domains & Families for RSBN1 Gene

Protein Domains for RSBN1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RSBN1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VWQ0

UniProtKB/Swiss-Prot:

RSBN1_HUMAN :
  • Belongs to the round spermatid basic protein 1 family.
Family:
  • Belongs to the round spermatid basic protein 1 family.
genes like me logo Genes that share domains with RSBN1: view

No data available for Gene Families for RSBN1 Gene

Function for RSBN1 Gene

genes like me logo Genes that share phenotypes with RSBN1: view

Animal Models for RSBN1 Gene

MGI Knock Outs for RSBN1:

Animal Model Products

miRNA for RSBN1 Gene

miRTarBase miRNAs that target RSBN1

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RSBN1 Gene

Localization for RSBN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RSBN1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RSBN1 Gene COMPARTMENTS Subcellular localization image for RSBN1 gene
Compartment Confidence
nucleus 5
cytosol 3
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RSBN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with RSBN1: view

Pathways & Interactions for RSBN1 Gene

SuperPathways for RSBN1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RSBN1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RSBN1 Gene

Transcripts for RSBN1 Gene

Unigene Clusters for RSBN1 Gene

Round spermatid basic protein 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RSBN1 Gene

No ASD Table

Relevant External Links for RSBN1 Gene

GeneLoc Exon Structure for
RSBN1
ECgene alternative splicing isoforms for
RSBN1

Expression for RSBN1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RSBN1 Gene

Protein differential expression in normal tissues from HIPED for RSBN1 Gene

This gene is overexpressed in Adrenal (15.8), Adipocyte (12.5), Lung (8.8), and Peripheral blood mononuclear cells (8.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RSBN1 Gene



Protein tissue co-expression partners for RSBN1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RSBN1 Gene:

RSBN1

SOURCE GeneReport for Unigene cluster for RSBN1 Gene:

Hs.486285
genes like me logo Genes that share expression patterns with RSBN1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RSBN1 Gene

Orthologs for RSBN1 Gene

This gene was present in the common ancestor of animals.

Orthologs for RSBN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RSBN1 34 35
  • 99.71 (n)
dog
(Canis familiaris)
Mammalia RSBN1 34 35
  • 95.71 (n)
cow
(Bos Taurus)
Mammalia RSBN1 34 35
  • 95.55 (n)
rat
(Rattus norvegicus)
Mammalia Rsbn1 34
  • 93.49 (n)
mouse
(Mus musculus)
Mammalia Rsbn1 34 16 35
  • 93.37 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RSBN1 35
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RSBN1 35
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves RSBN1 34 35
  • 81.59 (n)
lizard
(Anolis carolinensis)
Reptilia RSBN1 35
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rsbn1 34
  • 72.77 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100330644 34
  • 67.04 (n)
RSBN1 35
  • 56 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG10600 35
  • 16 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea dpy-21 35
  • 11 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.789 35
  • 55 (a)
OneToMany
Species where no ortholog for RSBN1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RSBN1 Gene

ENSEMBL:
Gene Tree for RSBN1 (if available)
TreeFam:
Gene Tree for RSBN1 (if available)

Paralogs for RSBN1 Gene

Paralogs for RSBN1 Gene

(1) SIMAP similar genes for RSBN1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RSBN1: view

Variants for RSBN1 Gene

Sequence variations from dbSNP and Humsavar for RSBN1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10127930 -- 113,786,299(+) AGAAG(C/T)ATGTG intron-variant
rs10707246 -- 113,793,678(+) AGTTC(-/T)TTTTT intron-variant, utr-variant-3-prime
rs10858018 -- 113,769,146(+) ctctc(A/G)gacca intron-variant
rs10858019 -- 113,776,611(+) AGCCA(A/C)CCTGG intron-variant
rs111410762 -- 113,796,605(+) CCACT(A/G)AAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RSBN1 Gene

Variant ID Type Subtype PubMed ID
esv23869 CNV loss 19812545
esv2461577 CNV deletion 19546169
esv3587239 CNV loss 21293372
esv3587240 CNV loss 21293372
esv3587247 CNV loss 21293372
esv3587248 CNV gain 21293372
esv3587249 CNV loss 21293372
nsv820192 CNV loss 19587683
nsv831093 CNV loss 17160897

Variation tolerance for RSBN1 Gene

Residual Variation Intolerance Score: 11% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.14; 23.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RSBN1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RSBN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RSBN1 Gene

Disorders for RSBN1 Gene

Relevant External Links for RSBN1

Genetic Association Database (GAD)
RSBN1
Human Genome Epidemiology (HuGE) Navigator
RSBN1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RSBN1

No disorders were found for RSBN1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RSBN1 Gene

Publications for RSBN1 Gene

  1. PTPN22 Trp620 explains the association of chromosome 1p13 with type 1 diabetes and shows a statistical interaction with HLA class II genotypes. (PMID: 18305142) Smyth D.J. … Todd J.A. (Diabetes 2008) 3 22 46 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Variants in TNFAIP3, STAT4, and C12orf30 loci associated with multiple autoimmune diseases are also associated with juvenile idiopathic arthritis. (PMID: 19565500) Prahalad S. … Jorde L.B. (Arthritis Rheum. 2009) 3 46 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for RSBN1 Gene

Sources for RSBN1 Gene

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