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Aliases for RRP7BP Gene

Aliases for RRP7BP Gene

  • Ribosomal RNA Processing 7 Homolog B, Pseudogene 2 3 5
  • RRP7B 3 4
  • Ribosomal RNA Processing 7 Homolog B (S. Cerevisiae), Pseudogene 2
  • Ribosomal RNA Processing 7 Homolog B (S. Cerevisiae) 2
  • Putative Gastric Cancer Antigen Zg14-Like Protein 4
  • DJ222E13.2 3

External Ids for RRP7BP Gene

Previous HGNC Symbols for RRP7BP Gene

  • RRP7B

Summaries for RRP7BP Gene

GeneCards Summary for RRP7BP Gene

RRP7BP (Ribosomal RNA Processing 7 Homolog B, Pseudogene) is a Pseudogene.

Additional gene information for RRP7BP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRP7BP Gene

Genomics for RRP7BP Gene

GeneHancer (GH) Regulatory Elements for RRP7BP Gene

Promoters and enhancers for RRP7BP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I042580 Promoter/Enhancer 1.4 Ensembl ENCODE 574.3 +0.2 204 1.7 HDAC1 PKNOX1 RB1 ARID4B KLF17 SIN3A ZNF76 DMAP1 ZNF48 YY1 RRP7BP CYB5R3 PIR35599
GH22I042612 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 23.9 -32.4 -32446 4.3 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 POLDIP3 GC22P042618 GC22P042619 RNU12 GC22P042614 ENSG00000270022 RPL5P34 XRCC6 NAGA RRP7BP
GH22I042618 Enhancer 1.3 Ensembl ENCODE dbSUPER 41.7 -38.8 -38845 3.9 ARNT FEZF1 ZNF2 ZNF121 GLIS2 ZNF143 FOS RUNX3 REST SSRP1 RRP7BP CYB5R3 XRCC6 RN7SKP80 ENSG00000270022 RNU12 ATP5MGL
GH22I041666 Enhancer 1.3 Ensembl ENCODE 38.4 +914.6 914594 2.5 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B RN7SKP80 EP300 PHF5A RRP7BP POLDIP3 ENSG00000232754 SLC25A17 MEI1 NAGA EP300-AS1
GH22I042641 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 18.1 -63.7 -63664 9.3 HDGF PKNOX1 FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 CYB5R3 RRP7BP RPL5P34 SERHL2 POLDIP3 RN7SKP80 A4GALT GC22P042648 ATP5MGL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RRP7BP on UCSC Golden Path with GeneCards custom track

Genomic Locations for RRP7BP Gene

Genomic Locations for RRP7BP Gene
chr22:42,555,223-42,582,038
(GRCh38/hg38)
Size:
26,816 bases
Orientation:
Minus strand
chr22:42,951,229-42,978,044
(GRCh37/hg19)

Genomic View for RRP7BP Gene

Genes around RRP7BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRP7BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRP7BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRP7BP Gene

Proteins for RRP7BP Gene

  • Protein details for RRP7BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NSQ0-RRP7B_HUMAN
    Recommended name:
    Putative ribosomal RNA-processing protein 7 homolog B
    Protein Accession:
    Q9NSQ0
    Secondary Accessions:
    • B3KQ98

    Protein attributes for RRP7BP Gene

    Size:
    103 amino acids
    Molecular mass:
    12575 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RRP7BP Gene

Post-translational modifications for RRP7BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRP7BP Gene

Domains & Families for RRP7BP Gene

Protein Domains for RRP7BP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RRP7BP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NSQ0

UniProtKB/Swiss-Prot:

RRP7B_HUMAN :
  • Belongs to the RRP7 family.
Family:
  • Belongs to the RRP7 family.
genes like me logo Genes that share domains with RRP7BP: view

No data available for Gene Families for RRP7BP Gene

Function for RRP7BP Gene

Phenotypes From GWAS Catalog for RRP7BP Gene

genes like me logo Genes that share phenotypes with RRP7BP: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRP7BP Gene

Localization for RRP7BP Gene

Gene Ontology (GO) - Cellular Components for RRP7BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032545 CURI complex IBA --
GO:0034456 UTP-C complex IBA --
genes like me logo Genes that share ontologies with RRP7BP: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RRP7BP Gene

Pathways & Interactions for RRP7BP Gene

SuperPathways for RRP7BP Gene

No Data Available

Interacting Proteins for RRP7BP Gene

Gene Ontology (GO) - Biological Process for RRP7BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000028 ribosomal small subunit assembly IBA --
GO:0006364 rRNA processing IBA --
genes like me logo Genes that share ontologies with RRP7BP: view

No data available for Pathways by source and SIGNOR curated interactions for RRP7BP Gene

Drugs & Compounds for RRP7BP Gene

No Compound Related Data Available

Transcripts for RRP7BP Gene

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRP7BP Gene

No ASD Table

Relevant External Links for RRP7BP Gene

GeneLoc Exon Structure for
RRP7BP
ECgene alternative splicing isoforms for
RRP7BP

Expression for RRP7BP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RRP7BP Gene

NURSA nuclear receptor signaling pathways regulating expression of RRP7BP Gene:

RRP7BP
genes like me logo Genes that share expression patterns with RRP7BP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRP7BP Gene

Orthologs for RRP7BP Gene

Evolution for RRP7BP Gene

ENSEMBL:
Gene Tree for RRP7BP (if available)
TreeFam:
Gene Tree for RRP7BP (if available)

No data available for Orthologs for RRP7BP Gene

Paralogs for RRP7BP Gene

No data available for Paralogs for RRP7BP Gene

Variants for RRP7BP Gene

Sequence variations from dbSNP and Humsavar for RRP7BP Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000413344 -- 42,575,079(-) G/A intron_variant
rs1000514071 -- 42,579,276(-) T/C intron_variant
rs1000565081 -- 42,579,010(-) G/A intron_variant
rs1000761273 -- 42,575,533(-) A/C intron_variant
rs1001368644 -- 42,576,375(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RRP7BP Gene

Variant ID Type Subtype PubMed ID
dgv101e203 CNV gain+loss 21179565
dgv1321e212 CNV gain 25503493
dgv1323e212 CNV loss 25503493
dgv4578n100 CNV gain 25217958
dgv4585n100 CNV gain 25217958
dgv843e214 CNV gain 21293372
esv2758839 CNV gain+loss 17122850
esv28197 CNV gain 19812545
esv32632 CNV gain 17666407
esv3568423 CNV loss 25503493
esv3575492 CNV gain 25503493
esv3647835 CNV loss 21293372
nsv1057729 CNV loss 25217958
nsv428391 CNV gain 18775914
nsv511642 CNV loss 21212237
nsv9912 CNV gain+loss 18304495

Additional Variant Information for RRP7BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRP7BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRP7BP Gene

Disorders for RRP7BP Gene

Additional Disease Information for RRP7BP

No disorders were found for RRP7BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRP7BP Gene

Publications for RRP7BP Gene

  1. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Reevaluating human gene annotation: a second-generation analysis of chromosome 22. (PMID: 12529303) Collins JE … Dunham I (Genome research 2003) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RRP7BP Gene

Sources for RRP7BP Gene

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