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Aliases for RRP7BP Gene

Aliases for RRP7BP Gene

  • Ribosomal RNA Processing 7 Homolog B, Pseudogene 2 3 5
  • RRP7B 3 4
  • Ribosomal RNA Processing 7 Homolog B (S. Cerevisiae), Pseudogene 2
  • Ribosomal RNA Processing 7 Homolog B (S. Cerevisiae) 2
  • Putative Gastric Cancer Antigen Zg14-Like Protein 4
  • DJ222E13.2 3

External Ids for RRP7BP Gene

Previous HGNC Symbols for RRP7BP Gene

  • RRP7B

Summaries for RRP7BP Gene

GeneCards Summary for RRP7BP Gene

RRP7BP (Ribosomal RNA Processing 7 Homolog B, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRP7BP Gene

Genomics for RRP7BP Gene

Regulatory Elements for RRP7BP Gene

Enhancers for RRP7BP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G042928 2.1 FANTOM5 Ensembl ENCODE dbSUPER 27.7 -353.1 -353111 12.6 HDGF PKNOX1 FOXA2 ARNT MLX WRNIP1 ARID4B SIN3A YBX1 ZNF143 ARFGAP3 RRP7BP PACSIN2 ENSG00000270083 NFAM1 ENSG00000261251 RN7SKP80 OGFRP1 POLDIP3 GC22P042938
GH22G042608 1.8 FANTOM5 Ensembl ENCODE dbSUPER 24.3 -27.9 -27917 3.4 FOXA2 ARNT SIN3A FEZF1 TCF12 GATA2 FOS ZNF263 JUNB NCOA1 RRP7BP CYB5R3 ATP5L2 SERHL2 GC22P042614 PIR37149
GH22G042623 1.1 ENCODE dbSUPER 39.6 -41.6 -41633 1.1 ZNF493 ZFP64 ZNF48 ZEB1 ZNF138 ZNF354C KLF7 ZNF680 ZNF654 SP3 RN7SKP80 RPL5P34 RRP7BP LOC100506679 CYB5R3 SNU13 RNU12 ENSG00000270022 ATP5L2
GH22G041666 1.4 Ensembl ENCODE 28.4 +914.6 914595 2.5 HDGF PKNOX1 FOXA2 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 RN7SKP80 EP300 PHF5A RRP7BP MEI1 EP300-AS1 XRCC6 LOC100313968 ENSG00000232754 SNU13
GH22G042989 1.9 FANTOM5 Ensembl ENCODE dbSUPER 19.9 -412.2 -412220 9.1 PKNOX1 FOXA2 WRNIP1 SIN3A ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF143 RN7SKP80 RPL5P34 RRP7BP PACSIN2 ARFGAP3 NAGA FAM109B A4GALT NDUFA6 PIR35633
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RRP7BP on UCSC Golden Path with GeneCards custom track

Promoters for RRP7BP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000146783 338 1001 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF143 PAF1 SP3

Genomic Location for RRP7BP Gene

Chromosome:
22
Start:
42,555,223 bp from pter
End:
42,582,038 bp from pter
Size:
26,816 bases
Orientation:
Minus strand

Genomic View for RRP7BP Gene

Genes around RRP7BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRP7BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRP7BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRP7BP Gene

Proteins for RRP7BP Gene

  • Protein details for RRP7BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NSQ0-RRP7B_HUMAN
    Recommended name:
    Putative ribosomal RNA-processing protein 7 homolog B
    Protein Accession:
    Q9NSQ0
    Secondary Accessions:
    • B3KQ98

    Protein attributes for RRP7BP Gene

    Size:
    103 amino acids
    Molecular mass:
    12575 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RRP7BP Gene

Post-translational modifications for RRP7BP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RRP7BP Gene

Domains & Families for RRP7BP Gene

Protein Domains for RRP7BP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RRP7BP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NSQ0

UniProtKB/Swiss-Prot:

RRP7B_HUMAN :
  • Belongs to the RRP7 family.
Family:
  • Belongs to the RRP7 family.
genes like me logo Genes that share domains with RRP7BP: view

No data available for Gene Families for RRP7BP Gene

Function for RRP7BP Gene

genes like me logo Genes that share phenotypes with RRP7BP: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRP7BP Gene

Localization for RRP7BP Gene

Gene Ontology (GO) - Cellular Components for RRP7BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032545 CURI complex IBA --
GO:0034456 UTP-C complex IBA --
genes like me logo Genes that share ontologies with RRP7BP: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RRP7BP Gene

Pathways & Interactions for RRP7BP Gene

SuperPathways for RRP7BP Gene

No Data Available

Interacting Proteins for RRP7BP Gene

Gene Ontology (GO) - Biological Process for RRP7BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000028 ribosomal small subunit assembly IBA --
GO:0006364 rRNA processing IBA --
genes like me logo Genes that share ontologies with RRP7BP: view

No data available for Pathways by source and SIGNOR curated interactions for RRP7BP Gene

Drugs & Compounds for RRP7BP Gene

No Compound Related Data Available

Transcripts for RRP7BP Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRP7BP Gene

No ASD Table

Relevant External Links for RRP7BP Gene

GeneLoc Exon Structure for
RRP7BP
ECgene alternative splicing isoforms for
RRP7BP

Expression for RRP7BP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RRP7BP Gene

NURSA nuclear receptor signaling pathways regulating expression of RRP7BP Gene:

RRP7BP
genes like me logo Genes that share expression patterns with RRP7BP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRP7BP Gene

Orthologs for RRP7BP Gene

Evolution for RRP7BP Gene

ENSEMBL:
Gene Tree for RRP7BP (if available)
TreeFam:
Gene Tree for RRP7BP (if available)

No data available for Orthologs for RRP7BP Gene

Paralogs for RRP7BP Gene

No data available for Paralogs for RRP7BP Gene

Variants for RRP7BP Gene

Sequence variations from dbSNP and Humsavar for RRP7BP Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000413344 -- 42,575,079(+) CTAGC(A/G)ACAAA intron-variant
rs1000514071 -- 42,579,276(+) TCTTA(C/T)ACTTT intron-variant
rs1000565081 -- 42,579,010(+) TGGGC(A/G)CCTGT intron-variant
rs1000761273 -- 42,575,533(+) CACAC(A/C)CACAC intron-variant
rs1001368644 -- 42,576,375(+) GCCCA(A/G)GATCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RRP7BP Gene

Variant ID Type Subtype PubMed ID
dgv101e203 CNV gain+loss 21179565
dgv1321e212 CNV gain 25503493
dgv1323e212 CNV loss 25503493
dgv4578n100 CNV gain 25217958
dgv4585n100 CNV gain 25217958
dgv843e214 CNV gain 21293372
esv2758839 CNV gain+loss 17122850
esv28197 CNV gain 19812545
esv32632 CNV gain 17666407
esv3568423 CNV loss 25503493
esv3575492 CNV gain 25503493
esv3647835 CNV loss 21293372
nsv1057729 CNV loss 25217958
nsv428391 CNV gain 18775914
nsv511642 CNV loss 21212237
nsv9912 CNV gain+loss 18304495

Relevant External Links for RRP7BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRP7BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRP7BP Gene

Disorders for RRP7BP Gene

Relevant External Links for RRP7BP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RRP7BP

No disorders were found for RRP7BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRP7BP Gene

Publications for RRP7BP Gene

  1. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Reevaluating human gene annotation: a second-generation analysis of chromosome 22. (PMID: 12529303) Collins J.E. … Dunham I. (Genome Res. 2003) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RRP7BP Gene

Sources for RRP7BP Gene

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