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Aliases for RRP1B Gene

Aliases for RRP1B Gene

  • Ribosomal RNA Processing 1B 2 3
  • KIAA0179 2 3 4 6
  • RRP1-Like Protein B 3 4
  • NNP1L 3 6
  • Ribosomal RNA Processing 1 Homolog B (S. Cerevisiae) 2
  • Protein Phosphatase 1, Regulatory Subunit 136 3
  • Ribosomal RNA Processing Protein 1 Homolog B 3
  • Ribosomal RNA Processing 1 Homolog B 3
  • Regulatory Subunit 136 2
  • Protein Phosphatase 1 2
  • PPP1R136 3
  • RRP1 3
  • Nnp1 3

External Ids for RRP1B Gene

Previous HGNC Symbols for RRP1B Gene

  • KIAA0179

Previous GeneCards Identifiers for RRP1B Gene

  • GC21P043904
  • GC21P045079
  • GC21P030447

Summaries for RRP1B Gene

GeneCards Summary for RRP1B Gene

RRP1B (Ribosomal RNA Processing 1B) is a Protein Coding gene. An important paralog of this gene is RRP1.

Gene Wiki entry for RRP1B Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRP1B Gene

Genomics for RRP1B Gene

Regulatory Elements for RRP1B Gene

Genomic Location for RRP1B Gene

Start:
43,659,548 bp from pter
End:
43,696,079 bp from pter
Size:
36,532 bases
Orientation:
Plus strand

Genomic View for RRP1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RRP1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRP1B Gene

Proteins for RRP1B Gene

  • Protein details for RRP1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14684-RRP1B_HUMAN
    Recommended name:
    Ribosomal RNA processing protein 1 homolog B
    Protein Accession:
    Q14684
    Secondary Accessions:
    • Q8TBZ4

    Protein attributes for RRP1B Gene

    Size:
    758 amino acids
    Molecular mass:
    84428 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA11496.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for RRP1B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RRP1B Gene

Proteomics data for RRP1B Gene at MOPED

Post-translational modifications for RRP1B Gene

Other Protein References for RRP1B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RRP1B Gene

Domains for RRP1B Gene

Protein Domains for RRP1B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for RRP1B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q14684

UniProtKB/Swiss-Prot:

RRP1B_HUMAN :
  • Q14684
Family:
  • Belongs to the RRP1 family.
genes like me logo Genes that share domains with RRP1B: view

No data available for Gene Families for RRP1B Gene

Function for RRP1B Gene

Gene Ontology (GO) - Molecular Function for RRP1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RRP1B: view

Phenotypes for RRP1B Gene

GenomeRNAi human phenotypes for RRP1B:
genes like me logo Genes that share phenotypes with RRP1B: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RRP1B Gene

Localization for RRP1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for RRP1B Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RRP1B Gene COMPARTMENTS Subcellular localization image for RRP1B gene
Compartment Confidence
cytosol 5
nucleus 5
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for RRP1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000791 euchromatin IEA --
GO:0000792 heterochromatin IEA --
GO:0005634 nucleus IDA 16780588
GO:0005730 nucleolus IDA --
GO:0005829 cytosol IDA 16780588
genes like me logo Genes that share ontologies with RRP1B: view

Pathways for RRP1B Gene

SuperPathways for RRP1B Gene

No Data Available

Gene Ontology (GO) - Biological Process for RRP1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006364 rRNA processing IEA --
GO:0010923 negative regulation of phosphatase activity IDA 19389623
genes like me logo Genes that share ontologies with RRP1B: view

No data available for Pathways by source for RRP1B Gene

Transcripts for RRP1B Gene

mRNA/cDNA for RRP1B Gene

(169) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRP1B Gene

Ribosomal RNA processing 1 homolog B (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RRP1B Gene

No ASD Table

Relevant External Links for RRP1B Gene

GeneLoc Exon Structure for
RRP1B
ECgene alternative splicing isoforms for
RRP1B

Expression for RRP1B Gene

mRNA expression in normal human tissues for RRP1B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RRP1B Gene

SOURCE GeneReport for Unigene cluster for RRP1B Gene Hs.565725

genes like me logo Genes that share expressions with RRP1B: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RRP1B Gene

Orthologs for RRP1B Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RRP1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RRP1B 35
  • 99.38 (n)
  • 99.34 (a)
RRP1B 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RRP1B 35
  • 76.8 (n)
  • 69.61 (a)
RRP1B 36
  • 66 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RRP1B 35
  • 77.42 (n)
  • 70.77 (a)
RRP1B 36
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rrp1b 35
  • 74.65 (n)
  • 65.32 (a)
Rrp1b 16
Rrp1b 36
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RRP1B 36
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RRP1B 36
  • 52 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rrp1b 35
  • 74.82 (n)
  • 66.53 (a)
chicken
(Gallus gallus)
Aves RRP1B 35
  • 59.26 (n)
  • 50.34 (a)
RRP1B 36
  • 45 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 43 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia MGC53743 35
tropical clawed frog
(Silurana tropicalis)
Amphibia rrp1b 35
  • 57.66 (n)
  • 53.58 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.16314 35
rrp1 35
  • 52.09 (n)
  • 41.18 (a)
rrp1 36
  • 33 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Nnp-1 36
  • 19 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C47E12.7 36
  • 24 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RRP1 36
  • 28 (a)
OneToMany
RRP1 38
Species with no ortholog for RRP1B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RRP1B Gene

ENSEMBL:
Gene Tree for RRP1B (if available)
TreeFam:
Gene Tree for RRP1B (if available)

Paralogs for RRP1B Gene

Paralogs for RRP1B Gene

Selected SIMAP similar genes for RRP1B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RRP1B: view

Variants for RRP1B Gene

Sequence variations from dbSNP and Humsavar for RRP1B Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs12320 -- 43,695,934(+) TGTCT(C/T)TTAAC utr-variant-3-prime
rs718470 -- 43,665,154(+) TGCTA(A/G)GCAGA intron-variant
rs724472 -- 43,683,164(+) caccg(A/T)gcccA intron-variant
rs762400 -- 43,693,748(+) CACTT(C/G)TGTTG utr-variant-3-prime
rs1041454 -- 43,692,779(+) GAGAG(A/C)CTGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RRP1B Gene

Variant ID Type Subtype PubMed ID
nsv913873 CNV Loss 21882294
nsv834106 CNV Loss 17160897
nsv913874 CNV Loss 21882294
esv999311 CNV Deletion 20482838
esv2723614 CNV Deletion 23290073
esv2723615 CNV Deletion 23290073

Relevant External Links for RRP1B Gene

HapMap Linkage Disequilibrium report
RRP1B
Human Gene Mutation Database (HGMD)
RRP1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RRP1B Gene

Disorders for RRP1B Gene

Relevant External Links for RRP1B

Genetic Association Database (GAD)
RRP1B
Human Genome Epidemiology (HuGE) Navigator
RRP1B
genes like me logo Genes that share disorders with RRP1B: view

No data available for UniProtKB/Swiss-Prot for RRP1B Gene

Publications for RRP1B Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  2. Functional proteomic analysis of human nucleolus. (PMID: 12429849) Scherl A. … Diaz J.-J. (Mol. Biol. Cell 2002) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1. (PMID: 8724849) Nagase T. … Nomura N. (DNA Res. 1996) 3 4
  5. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PMID: 16964243) Beausoleil S.A. … Gygi S.P. (Nat. Biotechnol. 2006) 3 4

Products for RRP1B Gene

Sources for RRP1B Gene

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