Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RRP15 Gene

Aliases for RRP15 Gene

  • Ribosomal RNA Processing 15 Homolog 2 3 5
  • KIAA0507 2 3 4
  • Ribosomal RNA-Processing Protein 15 3 4
  • Ribosomal RNA Processing 15 Homolog (S. Cerevisiae) 2
  • RRP15-Like Protein 3
  • CGI-115 3

External Ids for RRP15 Gene

Previous HGNC Symbols for RRP15 Gene

  • KIAA0507

Previous GeneCards Identifiers for RRP15 Gene

  • GC01P216526
  • GC01P218458
  • GC01P189126

Summaries for RRP15 Gene

Entrez Gene Summary for RRP15 Gene

  • This gene encodes a protein that co-purifies with human nucleoli. A similar protein in budding yeast is a component of pre-60S ribosomal particles, and is required for the early maturation steps of the 60S subunit. [provided by RefSeq, Jul 2008]

GeneCards Summary for RRP15 Gene

RRP15 (Ribosomal RNA Processing 15 Homolog) is a Protein Coding gene.

Gene Wiki entry for RRP15 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRP15 Gene

Genomics for RRP15 Gene

Regulatory Elements for RRP15 Gene

Enhancers for RRP15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F218284 0.6 ENCODE 63 +0.3 259 2.2 PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 RRP15 RIMKLBP2 GC01M218293
GH01F219173 0.8 ENCODE 20.9 +889.6 889642 3.6 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 KLF13 SP3 RRP15 ENSG00000223842 RIMKLBP2 LYPLAL1-AS1 GC01M219200
GH01F218344 2.2 FANTOM5 ENCODE 20.6 +64.2 64176 9.9 PKNOX1 CREB3L1 SIN3A FEZF1 GLI4 ZNF2 GLIS2 GATA2 ZNF263 SP3 RRP15 TGFB2-AS1 GC01M218380
GH01F218369 0.5 Ensembl ENCODE 18.5 +85.9 85947 3.9 SOX13 CTCF CEBPG RAD21 SMC3 NR2F6 MAFK SOX5 GATAD2A TEAD1 RRP15 TGFB2 TGFB2-AS1 C1orf143 GC01M218380
GH01F218373 1.4 FANTOM5 Ensembl ENCODE 17 +90.6 90602 4.6 SIN3A FEZF1 BRCA1 GLIS2 FOS ZNF263 SP3 JUNB TSHZ1 ZNF518A RRP15 RIMKLBP2 ENSG00000223842 TGFB2 TGFB2-AS1 C1orf143 GC01M218380
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RRP15 on UCSC Golden Path with GeneCards custom track

Promoters for RRP15 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000289221 116 2000 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for RRP15 Gene

Chromosome:
1
Start:
218,285,285 bp from pter
End:
218,337,983 bp from pter
Size:
52,699 bases
Orientation:
Plus strand

Genomic View for RRP15 Gene

Genes around RRP15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRP15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRP15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRP15 Gene

Proteins for RRP15 Gene

  • Protein details for RRP15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y3B9-RRP15_HUMAN
    Recommended name:
    RRP15-like protein
    Protein Accession:
    Q9Y3B9

    Protein attributes for RRP15 Gene

    Size:
    282 amino acids
    Molecular mass:
    31484 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAD34110.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH20641.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for RRP15 Gene

Post-translational modifications for RRP15 Gene

Other Protein References for RRP15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RRP15 Gene

Domains & Families for RRP15 Gene

Protein Domains for RRP15 Gene

Suggested Antigen Peptide Sequences for RRP15 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y3B9

UniProtKB/Swiss-Prot:

RRP15_HUMAN :
  • Belongs to the RRP15 family.
Family:
  • Belongs to the RRP15 family.
genes like me logo Genes that share domains with RRP15: view

No data available for Gene Families for RRP15 Gene

Function for RRP15 Gene

genes like me logo Genes that share phenotypes with RRP15: view

Animal Model Products

miRNA for RRP15 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RRP15 Gene

Localization for RRP15 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RRP15 Gene COMPARTMENTS Subcellular localization image for RRP15 gene
Compartment Confidence
mitochondrion 5
nucleus 5
cytoskeleton 1
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for RRP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
GO:0005739 mitochondrion IDA --
GO:0030687 preribosome, large subunit precursor IBA --
genes like me logo Genes that share ontologies with RRP15: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RRP15 Gene

Pathways & Interactions for RRP15 Gene

SuperPathways for RRP15 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RRP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000460 maturation of 5.8S rRNA IBA --
GO:0000470 maturation of LSU-rRNA IBA --
GO:0006364 rRNA processing IEA --
genes like me logo Genes that share ontologies with RRP15: view

No data available for Pathways by source and SIGNOR curated interactions for RRP15 Gene

Transcripts for RRP15 Gene

mRNA/cDNA for RRP15 Gene

Unigene Clusters for RRP15 Gene

Ribosomal RNA processing 15 homolog (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRP15 Gene

No ASD Table

Relevant External Links for RRP15 Gene

GeneLoc Exon Structure for
RRP15
ECgene alternative splicing isoforms for
RRP15

Expression for RRP15 Gene

mRNA expression in normal human tissues for RRP15 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RRP15 Gene

This gene is overexpressed in Lung (34.8) and Adrenal (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RRP15 Gene



Protein tissue co-expression partners for RRP15 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RRP15 Gene:

RRP15

SOURCE GeneReport for Unigene cluster for RRP15 Gene:

Hs.660109
genes like me logo Genes that share expression patterns with RRP15: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RRP15 Gene

Orthologs for RRP15 Gene

This gene was present in the common ancestor of animals.

Orthologs for RRP15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RRP15 34 35
  • 99.29 (n)
dog
(Canis familiaris)
Mammalia RRP15 34 35
  • 83.51 (n)
cow
(Bos Taurus)
Mammalia RRP15 34 35
  • 82.51 (n)
-- 35
  • 68 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rrp15 34 16 35
  • 77.45 (n)
rat
(Rattus norvegicus)
Mammalia Rrp15 34
  • 76.24 (n)
oppossum
(Monodelphis domestica)
Mammalia RRP15 35
  • 64 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RRP15 35
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves RRP15 34 35
  • 70.93 (n)
lizard
(Anolis carolinensis)
Reptilia RRP15 35
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rrp15 34
  • 66 (n)
Str.6662 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.18622 34
zebrafish
(Danio rerio)
Actinopterygii rrp15 34 35
  • 63.78 (n)
wufa20e10 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13265 34
fruit fly
(Drosophila melanogaster)
Insecta CG3817 35
  • 26 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 39 (a)
OneToOne
Species where no ortholog for RRP15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RRP15 Gene

ENSEMBL:
Gene Tree for RRP15 (if available)
TreeFam:
Gene Tree for RRP15 (if available)

Paralogs for RRP15 Gene

No data available for Paralogs for RRP15 Gene

Variants for RRP15 Gene

Sequence variations from dbSNP and Humsavar for RRP15 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10157333 -- 218,299,952(+) GAATT(G/T)GTTAA intron-variant
rs10157975 -- 218,300,289(+) TTGCT(A/G)TGTAA intron-variant
rs10159007 -- 218,299,106(+) TTCTG(A/G)TTTGC intron-variant
rs10159167 -- 218,300,144(+) TTTTT(C/G)TCTTT intron-variant
rs10495097 -- 218,297,244(+) TATAA(A/C)TCTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RRP15 Gene

Variant ID Type Subtype PubMed ID
esv3588869 CNV gain 21293372
nsv1005829 CNV gain 25217958
nsv4598 CNV deletion 18451855

Variation tolerance for RRP15 Gene

Residual Variation Intolerance Score: 76.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.77; 66.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RRP15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRP15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RRP15 Gene

Disorders for RRP15 Gene

Relevant External Links for RRP15

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RRP15

No disorders were found for RRP15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRP15 Gene

Publications for RRP15 Gene

  1. Rrp15p, a novel component of pre-ribosomal particles required for 60S ribosome subunit maturation. (PMID: 15769876) De Marchis M.L. … Fatica A. (RNA 2005) 2 3 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 3 4 64
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for RRP15 Gene

Sources for RRP15 Gene

Content
Loading form....