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Aliases for RRN3P3 Gene

Aliases for RRN3P3 Gene

  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 3 2 3

External Ids for RRN3P3 Gene

Previous GeneCards Identifiers for RRN3P3 Gene

  • GC16M022341
  • GC16M020675

Summaries for RRN3P3 Gene

GeneCards Summary for RRN3P3 Gene

RRN3P3 (RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P3 Gene

Genomics for RRN3P3 Gene

Genomic Location for RRN3P3 Gene

Start:
22,418,672 bp from pter
End:
22,437,715 bp from pter
Size:
19,044 bases
Orientation:
Minus strand

Genomic View for RRN3P3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RRN3P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P3 Gene

No data available for Regulatory Elements for RRN3P3 Gene

Proteins for RRN3P3 Gene

Post-translational modifications for RRN3P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P3 Gene

Domains for RRN3P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RRN3P3 Gene

Function for RRN3P3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RRN3P3 Gene

Localization for RRN3P3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RRN3P3 Gene COMPARTMENTS Subcellular localization image for RRN3P3 gene
Compartment Confidence
extracellular 2
peroxisome 2
cytosol 1
nucleus 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RRN3P3 Gene

Pathways for RRN3P3 Gene

SuperPathways for RRN3P3 Gene

No Data Available

Interacting Proteins for RRN3P3 Gene

Gene Ontology (GO) - Biological Process for RRN3P3 Gene

None

No data available for Pathways by source for RRN3P3 Gene

Transcripts for RRN3P3 Gene

mRNA/cDNA for RRN3P3 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P3 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RRN3P3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P3 Gene

No ASD Table

Relevant External Links for RRN3P3 Gene

GeneLoc Exon Structure for
RRN3P3
ECgene alternative splicing isoforms for
RRN3P3

Expression for RRN3P3 Gene

mRNA expression in normal human tissues for RRN3P3 Gene

SOURCE GeneReport for Unigene cluster for RRN3P3 Gene Hs.709576

genes like me logo Genes that share expressions with RRN3P3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RRN3P3 Gene

Orthologs for RRN3P3 Gene

Evolution for RRN3P3 Gene

ENSEMBL:
Gene Tree for RRN3P3 (if available)
TreeFam:
Gene Tree for RRN3P3 (if available)

No data available for Orthologs for RRN3P3 Gene

Paralogs for RRN3P3 Gene

No data available for Paralogs for RRN3P3 Gene

Variants for RRN3P3 Gene

Sequence variations from dbSNP and Humsavar for RRN3P3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1133587 -- 22,421,857(-) atcac(A/G)gccca intron-variant
rs1133590 -- 22,421,809(-) acctc(A/G)gcctc intron-variant
rs1134434 -- 22,419,861(-) AAGAC(G/T)ACAGA nc-transcript-variant
rs1134435 -- 22,419,856(-) ACAGA(A/T)GGGAA nc-transcript-variant
rs1134437 -- 22,419,846(-) AAGTG(C/T)GAGAA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P3 Gene

Variant ID Type Subtype PubMed ID
nsv7280 OTHER Inversion 18451855
dgv3n1 OTHER Inversion 15895083
nsv511047 OTHER Inversion 20534489
dgv47n16 OTHER Inversion 17901297
nsv499139 OTHER Inversion 21111241
esv998989 OTHER Inversion 20482838
dgv48n16 CNV Insertion 17901297
nsv1764 CNV Loss 18451855
nsv435668 CNV Deletion 17901297
nsv498860 CNV Loss 21111241
dgv2647n71 CNV Loss 21882294
dgv834e1 CNV Complex 17122850
dgv835e1 CNV Complex 17122850
nsv428324 CNV Gain 18775914
nsv433439 CNV Gain 18776910
esv25819 CNV Gain 19812545
nsv9405 CNV Gain+Loss 18304495
esv32980 CNV Loss 17666407

Relevant External Links for RRN3P3 Gene

HapMap Linkage Disequilibrium report
RRN3P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RRN3P3 Gene

Disorders for RRN3P3 Gene

Relevant External Links for RRN3P3

Genetic Association Database (GAD)
RRN3P3
genes like me logo Genes that share disorders with RRN3P3: view

No data available for UniProtKB/Swiss-Prot for RRN3P3 Gene

Publications for RRN3P3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for RRN3P3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RRN3P3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RRN3P3
    • Block miRNA regulation of RRN3P3 using miScript Target Protectors

    Sources for RRN3P3 Gene

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