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Aliases for RRN3P3 Gene

Aliases for RRN3P3 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 3 2 3 5
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 3 2

External Ids for RRN3P3 Gene

Previous GeneCards Identifiers for RRN3P3 Gene

  • GC16M022341
  • GC16M020675

Summaries for RRN3P3 Gene

GeneCards Summary for RRN3P3 Gene

RRN3P3 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P3 Gene

Genomics for RRN3P3 Gene

Regulatory Elements for RRN3P3 Gene

Enhancers for RRN3P3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RRN3P3 on UCSC Golden Path with GeneCards custom track

Promoters for RRN3P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RRN3P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RRN3P3 Gene

Chromosome:
16
Start:
22,418,672 bp from pter
End:
22,437,715 bp from pter
Size:
19,044 bases
Orientation:
Minus strand

Genomic View for RRN3P3 Gene

Genes around RRN3P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P3 Gene

Proteins for RRN3P3 Gene

Post-translational modifications for RRN3P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P3 Gene

Domains & Families for RRN3P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RRN3P3 Gene

Function for RRN3P3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P3 Gene

Localization for RRN3P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RRN3P3 Gene

Pathways & Interactions for RRN3P3 Gene

SuperPathways for RRN3P3 Gene

No Data Available

Interacting Proteins for RRN3P3 Gene

Gene Ontology (GO) - Biological Process for RRN3P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RRN3P3 Gene

Drugs & Compounds for RRN3P3 Gene

No Compound Related Data Available

Transcripts for RRN3P3 Gene

mRNA/cDNA for RRN3P3 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P3 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P3 Gene

No ASD Table

Relevant External Links for RRN3P3 Gene

GeneLoc Exon Structure for
RRN3P3
ECgene alternative splicing isoforms for
RRN3P3

Expression for RRN3P3 Gene

mRNA expression in normal human tissues for RRN3P3 Gene

SOURCE GeneReport for Unigene cluster for RRN3P3 Gene Hs.709576

genes like me logo Genes that share expression patterns with RRN3P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RRN3P3 Gene

Orthologs for RRN3P3 Gene

Evolution for RRN3P3 Gene

ENSEMBL:
Gene Tree for RRN3P3 (if available)
TreeFam:
Gene Tree for RRN3P3 (if available)

No data available for Orthologs for RRN3P3 Gene

Paralogs for RRN3P3 Gene

No data available for Paralogs for RRN3P3 Gene

Variants for RRN3P3 Gene

Sequence variations from dbSNP and Humsavar for RRN3P3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs4783462 -- 22,427,309(+) tgggc(C/T)ttcac intron-variant
rs9930216 -- 22,424,587(+) TCCCC(A/C)CCGCT intron-variant
rs62044813 -- 22,421,773(+) TTTTG(G/T)TGGCT intron-variant
rs62044814 -- 22,421,908(+) TGTCT(A/C)CAAAA intron-variant
rs62044815 -- 22,427,826(+) GGCTC(C/T)CAAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P3 Gene

Variant ID Type Subtype PubMed ID
nsv7280 OTHER Inversion 18451855
dgv3n1 OTHER Inversion 15895083
nsv511047 OTHER Inversion 20534489
dgv47n16 OTHER Inversion 17901297
nsv499139 OTHER Inversion 21111241
esv998989 OTHER Inversion 20482838
dgv48n16 CNV Insertion 17901297
nsv1764 CNV Loss 18451855
nsv435668 CNV Deletion 17901297
nsv498860 CNV Loss 21111241
dgv2647n71 CNV Loss 21882294
dgv834e1 CNV Complex 17122850
dgv835e1 CNV Complex 17122850
nsv428324 CNV Gain 18775914
nsv433439 CNV Gain 18776910
esv25819 CNV Gain 19812545
nsv9405 CNV Gain+Loss 18304495
esv32980 CNV Loss 17666407

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for RRN3P3 Gene

Disorders for RRN3P3 Gene

Relevant External Links for RRN3P3

Genetic Association Database (GAD)
RRN3P3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RRN3P3

No disorders were found for RRN3P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P3 Gene

Publications for RRN3P3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for RRN3P3 Gene

Sources for RRN3P3 Gene

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