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Aliases for RRN3P2 Gene

Aliases for RRN3P2 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2 2 3 5
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 2 2
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 2 4

External Ids for RRN3P2 Gene

Previous GeneCards Identifiers for RRN3P2 Gene

  • GC16P028997
  • GC16P026953

Summaries for RRN3P2 Gene

GeneCards Summary for RRN3P2 Gene

RRN3P2 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P2 Gene

Genomics for RRN3P2 Gene

Regulatory Elements for RRN3P2 Gene

Enhancers for RRN3P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F029803 0.4 ENCODE 20.2 +733.6 733602 10.3 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 ENSG00000260853 SMG1P2 MIR4517 ENSG00000260367 ZNF764 ZNF747 ZNF785 ENSG00000261766 ENSG00000247735 PRR14
GH16F030020 0.2 ENCODE 20.2 +946.5 946463 1.0 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF143 ZNF548 DEK SMG1P2 ZNF764 BCL7C RRN3P2 ORAI3 ENSG00000235560 NPIPB13 ZNF689 CDIPT PRR14
GH16F030052 0.2 ENCODE 20.2 +979.4 979363 3.1 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 ZNF747 ZNF764 SMG1P2 NPIPB13 BCL7C ZNF785 PRR14 ZNF629 ZNF689 ENSG00000235560
GH16F029128 1.1 Ensembl ENCODE 18.1 +55.5 55508 4.4 L3MBTL2 HLF NRF1 MNT RAD21 ZNF121 ZNF23 GLIS2 GLIS1 EGR2 RRN3P2 LOC101928215 YPEL3 LOC100129184 GC16P029140
GH16F029114 1.2 FANTOM5 Ensembl ENCODE 17.6 +42.5 42453 5.5 PKNOX1 ARID4B ZNF48 YY1 GLIS2 SP3 REST TBX21 ZNF623 MIER3 RRN3P2 LOC101928215 SPNS1 SLC7A5P1 ENSG00000260517 LOC100129184
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RRN3P2 on UCSC Golden Path with GeneCards custom track

Promoters for RRN3P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000506092 458 1401 HLF TBX21 POLR2A IKZF1 TARDBP NBN MLLT1 ZBTB33
ENSR00001800756 1458 201 MTA2 TBX21

Genomic Location for RRN3P2 Gene

Chromosome:
16
Start:
29,074,842 bp from pter
End:
29,116,718 bp from pter
Size:
41,877 bases
Orientation:
Plus strand

Genomic View for RRN3P2 Gene

Genes around RRN3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P2 Gene

Proteins for RRN3P2 Gene

  • Protein details for RRN3P2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIE6-RN3P2_HUMAN
    Recommended name:
    Putative RRN3-like protein RRN3P2
    Protein Accession:
    A6NIE6

    Protein attributes for RRN3P2 Gene

    Size:
    340 amino acids
    Molecular mass:
    38035 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RRN3P2 Gene

Post-translational modifications for RRN3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P2 Gene

Domains & Families for RRN3P2 Gene

Protein Domains for RRN3P2 Gene

Graphical View of Domain Structure for InterPro Entry

A6NIE6

UniProtKB/Swiss-Prot:

RN3P2_HUMAN :
  • Belongs to the RRN3 family.
Family:
  • Belongs to the RRN3 family.
genes like me logo Genes that share domains with RRN3P2: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RRN3P2 Gene

Function for RRN3P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P2 Gene

Localization for RRN3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RRN3P2 Gene

Pathways & Interactions for RRN3P2 Gene

SuperPathways for RRN3P2 Gene

No Data Available

Interacting Proteins for RRN3P2 Gene

Gene Ontology (GO) - Biological Process for RRN3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RRN3P2 Gene

Transcripts for RRN3P2 Gene

mRNA/cDNA for RRN3P2 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P2 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9
SP1: -
SP2: -
SP3: - -

Relevant External Links for RRN3P2 Gene

GeneLoc Exon Structure for
RRN3P2
ECgene alternative splicing isoforms for
RRN3P2

Expression for RRN3P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RRN3P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RRN3P2 Gene:

RRN3P2

SOURCE GeneReport for Unigene cluster for RRN3P2 Gene:

Hs.720348
genes like me logo Genes that share expression patterns with RRN3P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RRN3P2 Gene

Orthologs for RRN3P2 Gene

Evolution for RRN3P2 Gene

ENSEMBL:
Gene Tree for RRN3P2 (if available)
TreeFam:
Gene Tree for RRN3P2 (if available)

No data available for Orthologs for RRN3P2 Gene

Paralogs for RRN3P2 Gene

(3) SIMAP similar genes for RRN3P2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RRN3P2: view

No data available for Paralogs for RRN3P2 Gene

Variants for RRN3P2 Gene

Sequence variations from dbSNP and Humsavar for RRN3P2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10563125 -- 29,106,530(+) CAGTT(-/TG)TGTGT intron-variant
rs10564111 -- 29,091,275(+) AGAAA(-/AGAAA)CCACT intron-variant
rs10627447 -- 29,076,244(+) ATCTC(-/A)AAAAA intron-variant
rs10631798 -- 29,085,579(+) AAAAA(-/AA)GGAAA intron-variant
rs1063861 -- 29,084,485(+) CTTCT(A/G)TCATG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P2 Gene

Variant ID Type Subtype PubMed ID
dgv153e215 CNV deletion 23714750
esv1246246 CNV deletion 17803354
esv1259219 CNV insertion 17803354
esv2714172 CNV deletion 23290073
esv2758640 CNV gain+loss 17122850
esv2760421 CNV gain+loss 21179565
nsv103421 CNV deletion 16902084
nsv1055295 CNV gain 25217958
nsv1059555 CNV gain 25217958
nsv1123029 CNV deletion 24896259
nsv974793 CNV duplication 23825009
nsv984302 CNV duplication 23825009
nsv984303 CNV duplication 23825009

Relevant External Links for RRN3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRN3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRN3P2 Gene

Disorders for RRN3P2 Gene

Relevant External Links for RRN3P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RRN3P2

No disorders were found for RRN3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P2 Gene

Publications for RRN3P2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4 64
  3. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K. … Sugano S. (Gene 1994) 3 64

Products for RRN3P2 Gene

Sources for RRN3P2 Gene

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