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Aliases for RRN3P2 Gene

Aliases for RRN3P2 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2 2 3
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 2 2
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 2 4

External Ids for RRN3P2 Gene

Previous GeneCards Identifiers for RRN3P2 Gene

  • GC16P028997
  • GC16P026953

Summaries for RRN3P2 Gene

GeneCards Summary for RRN3P2 Gene

RRN3P2 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P2 Gene

Genomics for RRN3P2 Gene

Genomic Location for RRN3P2 Gene

Chromosome:
16
Start:
29,074,842 bp from pter
End:
29,116,718 bp from pter
Size:
41,877 bases
Orientation:
Plus strand

Genomic View for RRN3P2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RRN3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P2 Gene

No data available for Regulatory Elements for RRN3P2 Gene

Proteins for RRN3P2 Gene

  • Protein details for RRN3P2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIE6-RN3P2_HUMAN
    Recommended name:
    Putative RRN3-like protein RRN3P2
    Protein Accession:
    A6NIE6

    Protein attributes for RRN3P2 Gene

    Size:
    340 amino acids
    Molecular mass:
    38035 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RRN3P2 Gene

Proteomics data for RRN3P2 Gene at MOPED

Post-translational modifications for RRN3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P2 Gene

Domains & Families for RRN3P2 Gene

Protein Domains for RRN3P2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A6NIE6

UniProtKB/Swiss-Prot:

RN3P2_HUMAN :
  • Belongs to the RRN3 family.
Family:
  • Belongs to the RRN3 family.
genes like me logo Genes that share domains with RRN3P2: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RRN3P2 Gene

Function for RRN3P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P2 Gene

Localization for RRN3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RRN3P2 Gene

Pathways & Interactions for RRN3P2 Gene

SuperPathways for RRN3P2 Gene

No Data Available

Interacting Proteins for RRN3P2 Gene

Gene Ontology (GO) - Biological Process for RRN3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RRN3P2 Gene

Drugs & Compounds for RRN3P2 Gene

No Compound Related Data Available

Transcripts for RRN3P2 Gene

mRNA/cDNA for RRN3P2 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P2 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9
SP1: -
SP2: -
SP3: - -

Relevant External Links for RRN3P2 Gene

GeneLoc Exon Structure for
RRN3P2
ECgene alternative splicing isoforms for
RRN3P2

Expression for RRN3P2 Gene

mRNA expression in normal human tissues for RRN3P2 Gene

SOURCE GeneReport for Unigene cluster for RRN3P2 Gene Hs.720348

genes like me logo Genes that share expression patterns with RRN3P2: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RRN3P2 Gene

Orthologs for RRN3P2 Gene

Evolution for RRN3P2 Gene

ENSEMBL:
Gene Tree for RRN3P2 (if available)
TreeFam:
Gene Tree for RRN3P2 (if available)

No data available for Orthologs for RRN3P2 Gene

Paralogs for RRN3P2 Gene

(3) SIMAP similar genes for RRN3P2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RRN3P2: view

No data available for Paralogs for RRN3P2 Gene

Variants for RRN3P2 Gene

Sequence variations from dbSNP and Humsavar for RRN3P2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs153210 -- 29,082,642(-) cttga(G/T)cccag intron-variant
rs153211 -- 29,082,509(-) GGCGA(C/T)AGCGG intron-variant
rs153212 -- 29,079,537(-) gaacc(C/T)aggag intron-variant
rs168778 -- 29,101,305(-) TCCAT(C/G)TCAGG intron-variant
rs171669 -- 29,077,891(-) ACAAG(A/G)AGGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P2 Gene

Variant ID Type Subtype PubMed ID
dgv842e1 CNV Complex 17122850
esv2714172 CNV Deletion 23290073
esv1246246 CNV Deletion 17803354
dgv2665n71 CNV Loss 21882294
dgv2666n71 CNV Loss 21882294
nsv905707 CNV Loss 21882294
nsv103421 CNV Loss 16902084
esv1259219 CNV Insertion 17803354
nsv905710 CNV Loss 21882294

Relevant External Links for RRN3P2 Gene

HapMap Linkage Disequilibrium report
RRN3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRN3P2 Gene

Disorders for RRN3P2 Gene

Relevant External Links for RRN3P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RRN3P2
genes like me logo Genes that share disorders with RRN3P2: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P2 Gene

Publications for RRN3P2 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 67
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
  3. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K. … Sugano S. (Gene 1994) 67

Products for RRN3P2 Gene

Sources for RRN3P2 Gene

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