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Aliases for RRN3P1 Gene

Aliases for RRN3P1 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 1 2 3 5
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 1 2
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 1 4

External Ids for RRN3P1 Gene

Previous GeneCards Identifiers for RRN3P1 Gene

  • GC16U900959
  • GC16M014807

Summaries for RRN3P1 Gene

GeneCards Summary for RRN3P1 Gene

RRN3P1 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 1) is a Pseudogene.

Additional gene information for RRN3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P1 Gene

Genomics for RRN3P1 Gene

GeneHancer (GH) Regulatory Elements for RRN3P1 Gene

Promoters and enhancers for RRN3P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I021819 Promoter/Enhancer 1.5 Ensembl ENCODE 607.7 +0.1 109 1.8 HDGF SMAD1 ZFP64 SIN3A FEZF1 ZNF2 YY1 ZNF213 ZNF302 ZNF207 RRN3P1 NPIPB4 NPIPB5 NPIPB3 SMG1P3 ENSG00000260635 SMG1P4 SMG1P1 POLR3E ENSG00000260905
GH16I022296 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 46.9 -477.4 -477372 3.2 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 POLR3E TRL-AAG2-4 C16orf52 NPIPB4 SMG1P3 NPIPB3 RRN3P1 NPIPB5 SMG1P1 SMG1P4
GH16I021517 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 31.4 +300.2 300181 4.7 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SMG1P3 SLC7A5P2 THUMPD1 RRN3P1 NPIPB4 NPIPB3 NPIPB5 C16orf52 SMG1P1 ENSG00000260635
GH16I021300 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 20.7 +518.4 518364 3.9 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 ZNF263 SP3 CRYM CRYM-AS1 GC16M021264 RRN3P1 ENSG00000260306 C16orf52 TMEM159 DNAH3 EEF2K ENSG00000283421
GH16I021934 Enhancer 1.2 Ensembl ENCODE 20.9 -115.0 -115023 1.1 HDGF FOXA2 GLI4 ZNF2 ZNF143 ATF7 KLF7 ZNF548 SP3 REST ENSG00000260306 NPIPB5 NPIPB4 ENSG00000260635 MFSD13B SMG1P4 SMG1P1 SMG1P3 C16orf52 NPIPB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RRN3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RRN3P1 Gene

Genomic Locations for RRN3P1 Gene
24,305 bases
Minus strand

Genomic View for RRN3P1 Gene

Genes around RRN3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P1 Gene

Proteins for RRN3P1 Gene

  • Protein details for RRN3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative RRN3-like protein RRN3P1
    Protein Accession:
    Secondary Accessions:
    • A8K6T4
    • B3KWX9
    • O75704

    Protein attributes for RRN3P1 Gene

    152 amino acids
    Molecular mass:
    17255 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAC27822.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for RRN3P1 Gene

Post-translational modifications for RRN3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P1 Gene

Domains & Families for RRN3P1 Gene

Protein Domains for RRN3P1 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the RRN3 family.
  • Belongs to the RRN3 family.
genes like me logo Genes that share domains with RRN3P1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RRN3P1 Gene

Function for RRN3P1 Gene

Phenotypes From GWAS Catalog for RRN3P1 Gene

Gene Ontology (GO) - Molecular Function for RRN3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001042 RNA polymerase I core binding IBA --
GO:0001181 transcription factor activity, core RNA polymerase I binding IBA --
genes like me logo Genes that share ontologies with RRN3P1: view

Phenotypes for RRN3P1 Gene

genes like me logo Genes that share phenotypes with RRN3P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P1 Gene

Localization for RRN3P1 Gene

Gene Ontology (GO) - Cellular Components for RRN3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with RRN3P1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RRN3P1 Gene

Pathways & Interactions for RRN3P1 Gene

SuperPathways for RRN3P1 Gene

No Data Available

Interacting Proteins for RRN3P1 Gene

Gene Ontology (GO) - Biological Process for RRN3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006356 regulation of transcription by RNA polymerase I IEA --
genes like me logo Genes that share ontologies with RRN3P1: view

No data available for Pathways by source and SIGNOR curated interactions for RRN3P1 Gene

Drugs & Compounds for RRN3P1 Gene

No Compound Related Data Available

Transcripts for RRN3P1 Gene

mRNA/cDNA for RRN3P1 Gene

(12) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P1 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P1 Gene

No ASD Table

Relevant External Links for RRN3P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RRN3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RRN3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RRN3P1 Gene:


SOURCE GeneReport for Unigene cluster for RRN3P1 Gene:

genes like me logo Genes that share expression patterns with RRN3P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RRN3P1 Gene

Orthologs for RRN3P1 Gene

Evolution for RRN3P1 Gene

Gene Tree for RRN3P1 (if available)
Gene Tree for RRN3P1 (if available)

No data available for Orthologs for RRN3P1 Gene

Paralogs for RRN3P1 Gene

(2) SIMAP similar genes for RRN3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RRN3P1: view

No data available for Paralogs for RRN3P1 Gene

Variants for RRN3P1 Gene

Sequence variations from dbSNP and Humsavar for RRN3P1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000149890 -- 21,817,375(-) T/C intron_variant
rs1000209803 -- 21,802,932(-) C/T intron_variant
rs1000217265 -- 21,805,678(-) A/T intron_variant
rs1000271355 -- 21,817,108(-) A/C intron_variant
rs1000429620 -- 21,807,507(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P1 Gene

Variant ID Type Subtype PubMed ID
dgv116e55 CNV loss 17911159
dgv2800n100 CNV gain 25217958
dgv2804n100 CNV gain 25217958
dgv2805n100 CNV gain+loss 25217958
dgv2807n100 CNV loss 25217958
dgv3n1 OTHER inversion 15895083
dgv47n16 OTHER inversion 17901297
dgv806e212 CNV loss 25503493
esv25717 CNV gain+loss 19812545
esv2758636 CNV gain+loss 17122850
esv2762010 CNV gain+loss 21179565
esv3368991 OTHER inversion 20981092
esv34235 CNV gain 17911159
esv34544 CNV gain 17911159
esv3570431 CNV gain 25503493
esv3638189 CNV loss 21293372
esv3638190 CNV gain 21293372
esv3638192 CNV loss 21293372
esv998989 OTHER inversion 20482838
nsv1077770 OTHER inversion 25765185
nsv1140248 OTHER inversion 24896259
nsv428322 CNV gain 18775914
nsv433438 CNV gain 18776910
nsv499139 OTHER inversion 21111241
nsv571631 CNV loss 21841781
nsv7280 OTHER inversion 18451855
nsv820589 CNV duplication 20802225
nsv833167 CNV gain 17160897
nsv9397 CNV gain+loss 18304495
nsv978111 CNV duplication 23825009

Additional Variant Information for RRN3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRN3P1 Gene

Disorders for RRN3P1 Gene

Additional Disease Information for RRN3P1

No disorders were found for RRN3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P1 Gene

Publications for RRN3P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 58
  5. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3 58

Products for RRN3P1 Gene

Sources for RRN3P1 Gene

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