Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RRN3P1 Gene

Aliases for RRN3P1 Gene

  • RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 1 2 3 5
  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 1 2
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 1 4

External Ids for RRN3P1 Gene

Previous GeneCards Identifiers for RRN3P1 Gene

  • GC16U900959
  • GC16M014807

Summaries for RRN3P1 Gene

GeneCards Summary for RRN3P1 Gene

RRN3P1 (RRN3 Homolog, RNA Polymerase I Transcription Factor Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P1 Gene

Genomics for RRN3P1 Gene

Regulatory Elements for RRN3P1 Gene

Enhancers for RRN3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F021819 0.6 ENCODE 41 +0.2 151 1.6 HDGF ZFP64 ZNF493 SIN3A FEZF1 ZNF2 YY1 ZNF121 ZNF302 ZNF143 NPIPB5 ENSG00000260635 SMG1P1 SMG1P4 ENSG00000260905 MFSD13B RRN3P1 ENSG00000260306 EEF2K DCUN1D3
GH16F021501 0.2 ENCODE 31.3 +317.9 317881 2.5 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 THUMPD1 NPIPB5 ENSG00000260635 SMG1P1 SMG1P4 MFSD13B RRN3P1 EEF2K ENSG00000260306 DCUN1D3
GH16F022162 0.5 Ensembl 12.9 -342.1 -342126 0.8 BCOR MAZ SP3 POLR2A SP2 ZNF140 KDM1A NPIPB5 MFSD13B RRN3P1 ENSG00000260905 ENSG00000260306 ENSG00000260635 SDR42E2 GC16P022190
GH16F022211 0.2 ENCODE 12.9 -391.5 -391485 0.2 CTCF ZNF140 PRDM10 NPIPB5 MFSD13B RRN3P1 ENSG00000260905 ENSG00000260306 ENSG00000260635 SMG1P1 EEF2K ENSG00000261113
GH16F022011 0.2 Ensembl 11.8 -190.7 -190691 0.2 STAT1 RFX1 NR2F1 YY1 ZNF585B STAT2 NR2F6 PRDM10 ZNF600 ZBTB17 C16orf52 RRN3P1 ENSG00000260306 SDR42E2 ENSG00000275445 GC16P022022
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RRN3P1 on UCSC Golden Path with GeneCards custom track

Promoters for RRN3P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000505203 9 2400 HDGF ZFP64 ZNF493 SIN3A FEZF1 ZNF2 YY1 ZNF121 ZNF302 ZNF143

Genomic Location for RRN3P1 Gene

Chromosome:
16
Start:
21,796,106 bp from pter
End:
21,820,410 bp from pter
Size:
24,305 bases
Orientation:
Minus strand

Genomic View for RRN3P1 Gene

Genes around RRN3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RRN3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RRN3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P1 Gene

Proteins for RRN3P1 Gene

  • Protein details for RRN3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2M238-RN3P1_HUMAN
    Recommended name:
    Putative RRN3-like protein RRN3P1
    Protein Accession:
    Q2M238
    Secondary Accessions:
    • A8K6T4
    • B3KWX9
    • O75704

    Protein attributes for RRN3P1 Gene

    Size:
    152 amino acids
    Molecular mass:
    17255 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC27822.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for RRN3P1 Gene

Post-translational modifications for RRN3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P1 Gene

Domains & Families for RRN3P1 Gene

Protein Domains for RRN3P1 Gene

Graphical View of Domain Structure for InterPro Entry

Q2M238

UniProtKB/Swiss-Prot:

RN3P1_HUMAN :
  • Belongs to the RRN3 family.
Family:
  • Belongs to the RRN3 family.
genes like me logo Genes that share domains with RRN3P1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RRN3P1 Gene

Function for RRN3P1 Gene

Gene Ontology (GO) - Molecular Function for RRN3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001042 RNA polymerase I core binding IBA --
GO:0001181 transcription factor activity, core RNA polymerase I binding IBA --
genes like me logo Genes that share ontologies with RRN3P1: view

Phenotypes for RRN3P1 Gene

genes like me logo Genes that share phenotypes with RRN3P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RRN3P1 Gene

Localization for RRN3P1 Gene

Gene Ontology (GO) - Cellular Components for RRN3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with RRN3P1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RRN3P1 Gene

Pathways & Interactions for RRN3P1 Gene

SuperPathways for RRN3P1 Gene

No Data Available

Interacting Proteins for RRN3P1 Gene

Gene Ontology (GO) - Biological Process for RRN3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001180 transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript IBA --
GO:0006356 regulation of transcription from RNA polymerase I promoter IEA --
genes like me logo Genes that share ontologies with RRN3P1: view

No data available for Pathways by source and SIGNOR curated interactions for RRN3P1 Gene

Transcripts for RRN3P1 Gene

mRNA/cDNA for RRN3P1 Gene

(12) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P1 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P1 Gene

No ASD Table

Relevant External Links for RRN3P1 Gene

GeneLoc Exon Structure for
RRN3P1
ECgene alternative splicing isoforms for
RRN3P1

Expression for RRN3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RRN3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RRN3P1 Gene:

RRN3P1

SOURCE GeneReport for Unigene cluster for RRN3P1 Gene:

Hs.31290
genes like me logo Genes that share expression patterns with RRN3P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RRN3P1 Gene

Orthologs for RRN3P1 Gene

Evolution for RRN3P1 Gene

ENSEMBL:
Gene Tree for RRN3P1 (if available)
TreeFam:
Gene Tree for RRN3P1 (if available)

No data available for Orthologs for RRN3P1 Gene

Paralogs for RRN3P1 Gene

(2) SIMAP similar genes for RRN3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RRN3P1: view

No data available for Paralogs for RRN3P1 Gene

Variants for RRN3P1 Gene

Sequence variations from dbSNP and Humsavar for RRN3P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10530418 -- 21,820,979(+) TTGAC(-/TTTATTTA)TTTAT upstream-variant-2KB
rs11074501 -- 21,814,579(+) ATGAT(C/T)GGGCC intron-variant
rs111353871 -- 21,805,706(+) CTTTT(C/T)TTTTT intron-variant
rs111535833 -- 21,814,259(+) CAAGA(A/G)CAAAA intron-variant
rs111867343 -- 21,815,830(+) CGGGC(A/G)CGTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P1 Gene

Variant ID Type Subtype PubMed ID
dgv116e55 CNV loss 17911159
dgv2800n100 CNV gain 25217958
dgv2804n100 CNV gain 25217958
dgv2805n100 CNV gain+loss 25217958
dgv2807n100 CNV loss 25217958
dgv3n1 OTHER inversion 15895083
dgv47n16 OTHER inversion 17901297
dgv806e212 CNV loss 25503493
esv25717 CNV gain+loss 19812545
esv2758636 CNV gain+loss 17122850
esv2762010 CNV gain+loss 21179565
esv3368991 OTHER inversion 20981092
esv34235 CNV gain 17911159
esv34544 CNV gain 17911159
esv3570431 CNV gain 25503493
esv3638189 CNV loss 21293372
esv3638190 CNV gain 21293372
esv3638192 CNV loss 21293372
esv998989 OTHER inversion 20482838
nsv1077770 OTHER inversion 25765185
nsv1140248 OTHER inversion 24896259
nsv428322 CNV gain 18775914
nsv433438 CNV gain 18776910
nsv499139 OTHER inversion 21111241
nsv571631 CNV loss 21841781
nsv7280 OTHER inversion 18451855
nsv820589 CNV duplication 20802225
nsv833167 CNV gain 17160897
nsv9397 CNV gain+loss 18304495
nsv978111 CNV duplication 23825009

Relevant External Links for RRN3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RRN3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RRN3P1 Gene

Disorders for RRN3P1 Gene

Relevant External Links for RRN3P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RRN3P1

No disorders were found for RRN3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RRN3P1 Gene

Publications for RRN3P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64
  5. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3 64

Products for RRN3P1 Gene

Sources for RRN3P1 Gene

Content
Loading form....