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Aliases for RRN3P1 Gene

Aliases for RRN3P1 Gene

  • RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 1 2 3
  • RNA Polymerase I Transcription Factor Homolog Pseudogene 1 4

External Ids for RRN3P1 Gene

Previous GeneCards Identifiers for RRN3P1 Gene

  • GC16U900959
  • GC16M014807

Summaries for RRN3P1 Gene

GeneCards Summary for RRN3P1 Gene

RRN3P1 (RNA Polymerase I Transcription Factor Homolog (S. Cerevisiae) Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RRN3P1 Gene

Genomics for RRN3P1 Gene

Genomic Location for RRN3P1 Gene

Start:
21,796,106 bp from pter
End:
21,820,410 bp from pter
Size:
24,305 bases
Orientation:
Minus strand

Genomic View for RRN3P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RRN3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RRN3P1 Gene

No data available for Regulatory Elements for RRN3P1 Gene

Proteins for RRN3P1 Gene

  • Protein details for RRN3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2M238-RN3P1_HUMAN
    Recommended name:
    Putative RRN3-like protein RRN3P1
    Protein Accession:
    Q2M238
    Secondary Accessions:
    • A8K6T4
    • B3KWX9
    • O75704

    Protein attributes for RRN3P1 Gene

    Size:
    152 amino acids
    Molecular mass:
    17255 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC27822.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for RRN3P1 Gene

Proteomics data for RRN3P1 Gene at MOPED

Post-translational modifications for RRN3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RRN3P1 Gene

Domains for RRN3P1 Gene

Protein Domains for RRN3P1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q2M238

UniProtKB/Swiss-Prot:

RN3P1_HUMAN :
  • Q2M238
Family:
  • Belongs to the RRN3 family.
genes like me logo Genes that share domains with RRN3P1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RRN3P1 Gene

Function for RRN3P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RRN3P1 Gene

Localization for RRN3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RRN3P1 Gene

Pathways for RRN3P1 Gene

SuperPathways for RRN3P1 Gene

No Data Available

Interacting Proteins for RRN3P1 Gene

Gene Ontology (GO) - Biological Process for RRN3P1 Gene

None

No data available for Pathways by source for RRN3P1 Gene

Transcripts for RRN3P1 Gene

mRNA/cDNA for RRN3P1 Gene

(12) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RRN3P1 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RRN3P1 Gene

No ASD Table

Relevant External Links for RRN3P1 Gene

GeneLoc Exon Structure for
RRN3P1
ECgene alternative splicing isoforms for
RRN3P1

Expression for RRN3P1 Gene

mRNA expression in normal human tissues for RRN3P1 Gene

SOURCE GeneReport for Unigene cluster for RRN3P1 Gene Hs.31290

genes like me logo Genes that share expressions with RRN3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RRN3P1 Gene

Orthologs for RRN3P1 Gene

Evolution for RRN3P1 Gene

ENSEMBL:
Gene Tree for RRN3P1 (if available)
TreeFam:
Gene Tree for RRN3P1 (if available)

No data available for Orthologs for RRN3P1 Gene

Paralogs for RRN3P1 Gene

Selected SIMAP similar genes for RRN3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RRN3P1: view

No data available for Paralogs for RRN3P1 Gene

Variants for RRN3P1 Gene

Sequence variations from dbSNP and Humsavar for RRN3P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs451972 -- 21,796,295(-) cacca(C/T)gttag downstream-variant-500B
rs456359 -- 21,797,174(-) ccagc(A/G)gctgc intron-variant
rs462562 -- 21,796,138(+) TGCCT(A/T)GACAC downstream-variant-500B
rs493020 -- 21,811,835(-) AAGCC(C/T)GAGTG nc-transcript-variant
rs683501 -- 21,809,910(-) attgt(A/G)ccact intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RRN3P1 Gene

Variant ID Type Subtype PubMed ID
esv34235 CNV Gain 17911159
dgv830e1 CNV Complex 17122850
esv25717 CNV Gain+Loss 19812545
nsv433438 CNV Gain 18776910
nsv9397 CNV Gain+Loss 18304495
dgv832e1 CNV Complex 17122850
nsv428322 CNV Gain 18775914
esv34544 CNV Gain 17911159
dgv116e55 CNV Loss 17911159
nsv7280 OTHER Inversion 18451855
dgv3n1 OTHER Inversion 15895083
nsv511047 OTHER Inversion 20534489
nsv905590 CNV Gain 21882294
dgv47n16 OTHER Inversion 17901297
nsv499139 OTHER Inversion 21111241
esv998989 OTHER Inversion 20482838
nsv833167 CNV Gain 17160897
esv2714070 CNV Deletion 23290073
nsv820589 CNV Duplication 20802225
dgv48n16 CNV Insertion 17901297
nsv1764 CNV Loss 18451855
nsv435668 CNV Deletion 17901297
nsv498860 CNV Loss 21111241

Relevant External Links for RRN3P1 Gene

HapMap Linkage Disequilibrium report
RRN3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RRN3P1 Gene

Disorders for RRN3P1 Gene

No disorders were found for RRN3P1 Gene.

No data available for UniProtKB/Swiss-Prot for RRN3P1 Gene

Publications for RRN3P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4
  5. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 3

Products for RRN3P1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RRN3P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RRN3P1
    • Block miRNA regulation of RRN3P1 using miScript Target Protectors

    Sources for RRN3P1 Gene

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