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Aliases for RPSAP9 Gene

Aliases for RPSAP9 Gene

  • Ribosomal Protein SA Pseudogene 9 2 3
  • Laminin Receptor 1 Pseudogene 9 2 3
  • RPSA_20_986 3
  • LAMR1P9 3

External Ids for RPSAP9 Gene

Previous Symbols for RPSAP9 Gene

  • LAMR1P9

Summaries for RPSAP9 Gene

GeneCards Summary for RPSAP9 Gene

RPSAP9 (Ribosomal Protein SA Pseudogene 9) is a Pseudogene. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP9 Gene

Genomics for RPSAP9 Gene

Genomic Location for RPSAP9 Gene

Start:
76,398,599 bp from pter
End:
76,400,038 bp from pter
Size:
1,440 bases
Orientation:
Plus strand

Genomic View for RPSAP9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPSAP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP9 Gene

Regulatory Elements for RPSAP9 Gene

Proteins for RPSAP9 Gene

Post-translational modifications for RPSAP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP9 Gene

Domains for RPSAP9 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RPSAP9 Gene

Function for RPSAP9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPSAP9 Gene

Localization for RPSAP9 Gene

No data available for Gene Ontology (GO) - Cellular Components for RPSAP9 Gene

Pathways for RPSAP9 Gene

genes like me logo Genes that share pathways with RPSAP9: view

Pathways by source for RPSAP9 Gene

Interacting Proteins for RPSAP9 Gene

Gene Ontology (GO) - Biological Process for RPSAP9 Gene

None

Transcripts for RPSAP9 Gene

mRNA/cDNA for RPSAP9 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP9 Gene

Ribosomal protein SA pseudogene 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP9 Gene

No ASD Table

Relevant External Links for RPSAP9 Gene

GeneLoc Exon Structure for
RPSAP9
ECgene alternative splicing isoforms for
RPSAP9

Expression for RPSAP9 Gene

mRNA expression in normal human tissues for RPSAP9 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP9 Gene

This gene is overexpressed in Testis (4.7).

SOURCE GeneReport for Unigene cluster for RPSAP9 Gene Hs.655646

genes like me logo Genes that share expressions with RPSAP9: view

Orthologs for RPSAP9 Gene

Evolution for RPSAP9 Gene

ENSEMBL:
Gene Tree for RPSAP9 (if available)
TreeFam:
Gene Tree for RPSAP9 (if available)

No data available for Orthologs for RPSAP9 Gene

Paralogs for RPSAP9 Gene

No data available for Paralogs for RPSAP9 Gene

Variants for RPSAP9 Gene

Sequence variations from dbSNP and Humsavar for RPSAP9 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs2377640 -- 76,397,964(-) TGAGA(A/C)TGCTA upstream-variant-2KB
rs2377641 -- 76,397,736(-) TGAGC(A/G)GTGGT upstream-variant-2KB
rs2490585 -- 76,397,174(+) ctact(C/T)gggag upstream-variant-2KB
rs2501921 -- 76,396,812(-) gcccc(A/G)tatgg upstream-variant-2KB
rs4372070 -- 76,397,742(+) GCTCA(A/G)TAGCG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPSAP9 Gene

Variant ID Type Subtype PubMed ID
nsv893478 CNV Gain 21882294
nsv893479 CNV Gain 21882294
nsv6570 CNV Insertion 18451855

Relevant External Links for RPSAP9 Gene

HapMap Linkage Disequilibrium report
RPSAP9

Disorders for RPSAP9 Gene

Relevant External Links for RPSAP9

Genetic Association Database (GAD)
RPSAP9
genes like me logo Genes that share disorders with RPSAP9: view

No data available for UniProtKB/Swiss-Prot for RPSAP9 Gene

Publications for RPSAP9 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes. (PMID: 21546767) Murea M. … Freedman B.I. (Am. J. Nephrol. 2011) 3 49
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for RPSAP9 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPSAP9
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RPSAP9
    • Block miRNA regulation of RPSAP9 using miScript Target Protectors

    Sources for RPSAP9 Gene

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