Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPSAP9 Gene

Aliases for RPSAP9 Gene

  • Ribosomal Protein SA Pseudogene 9 2 3 5
  • Laminin Receptor 1 Pseudogene 9 2 3
  • RPSA_20_986 3
  • LAMR1P9 3

External Ids for RPSAP9 Gene

Previous HGNC Symbols for RPSAP9 Gene

  • LAMR1P9

Previous GeneCards Identifiers for RPSAP9 Gene

  • GC09U900700
  • GC09P078204
  • GC09P079014

Summaries for RPSAP9 Gene

GeneCards Summary for RPSAP9 Gene

RPSAP9 (Ribosomal Protein SA Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP9 Gene

Genomics for RPSAP9 Gene

Regulatory Elements for RPSAP9 Gene

Genomic Location for RPSAP9 Gene

Chromosome:
9
Start:
76,398,599 bp from pter
End:
76,400,038 bp from pter
Size:
1,440 bases
Orientation:
Plus strand

Genomic View for RPSAP9 Gene

Genes around RPSAP9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP9 Gene

Proteins for RPSAP9 Gene

Post-translational modifications for RPSAP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP9 Gene

Domains & Families for RPSAP9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP9 Gene

Function for RPSAP9 Gene

genes like me logo Genes that share phenotypes with RPSAP9: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP9 Gene

Localization for RPSAP9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP9 Gene

Pathways & Interactions for RPSAP9 Gene

SuperPathways for RPSAP9 Gene

No Data Available

Interacting Proteins for RPSAP9 Gene

Gene Ontology (GO) - Biological Process for RPSAP9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP9 Gene

Drugs & Compounds for RPSAP9 Gene

No Compound Related Data Available

Transcripts for RPSAP9 Gene

mRNA/cDNA for RPSAP9 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP9 Gene

Ribosomal protein SA pseudogene 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP9 Gene

No ASD Table

Relevant External Links for RPSAP9 Gene

GeneLoc Exon Structure for
RPSAP9
ECgene alternative splicing isoforms for
RPSAP9

Expression for RPSAP9 Gene

mRNA expression in normal human tissues for RPSAP9 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP9 Gene

This gene is overexpressed in Testis (x4.7).

SOURCE GeneReport for Unigene cluster for RPSAP9 Gene Hs.655646

genes like me logo Genes that share expression patterns with RPSAP9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RPSAP9 Gene

Orthologs for RPSAP9 Gene

Evolution for RPSAP9 Gene

ENSEMBL:
Gene Tree for RPSAP9 (if available)
TreeFam:
Gene Tree for RPSAP9 (if available)

No data available for Orthologs for RPSAP9 Gene

Paralogs for RPSAP9 Gene

No data available for Paralogs for RPSAP9 Gene

Variants for RPSAP9 Gene

Sequence variations from dbSNP and Humsavar for RPSAP9 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs2501921 -- 76,396,812(-) gcccc(A/G)tatgg upstream-variant-2KB
rs2490585 -- 76,397,174(+) ctact(C/T)gggag upstream-variant-2KB
rs2377640 -- 76,397,964(-) TGAGA(A/C)TGCTA upstream-variant-2KB
rs2377641 -- 76,397,736(-) TGAGC(A/G)GTGGT upstream-variant-2KB
rs4372070 -- 76,397,742(+) GCTCA(A/G)TAGCG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPSAP9 Gene

Variant ID Type Subtype PubMed ID
nsv893478 CNV Gain 21882294
nsv893479 CNV Gain 21882294
nsv6570 CNV Insertion 18451855

Relevant External Links for RPSAP9 Gene

HapMap Linkage Disequilibrium report
RPSAP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPSAP9 Gene

Disorders for RPSAP9 Gene

Relevant External Links for RPSAP9

Genetic Association Database (GAD)
RPSAP9
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPSAP9

No disorders were found for RPSAP9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP9 Gene

Publications for RPSAP9 Gene

  1. Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes. (PMID: 21546767) Murea M. … Freedman B.I. (Am. J. Nephrol. 2011) 3 48 67
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for RPSAP9 Gene

Sources for RPSAP9 Gene

Back to Top

Content