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Aliases for RPSAP9 Gene

Aliases for RPSAP9 Gene

  • Ribosomal Protein SA Pseudogene 9 2 3 5
  • Laminin Receptor 1 Pseudogene 9 2 3
  • RPSA_20_986 3
  • LAMR1P9 3

External Ids for RPSAP9 Gene

Previous HGNC Symbols for RPSAP9 Gene

  • LAMR1P9

Previous GeneCards Identifiers for RPSAP9 Gene

  • GC09U900700
  • GC09P078204
  • GC09P079014

Summaries for RPSAP9 Gene

GeneCards Summary for RPSAP9 Gene

RPSAP9 (Ribosomal Protein SA Pseudogene 9) is a Pseudogene.

Additional gene information for RPSAP9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP9 Gene

Genomics for RPSAP9 Gene

GeneHancer (GH) Regulatory Elements for RPSAP9 Gene

Promoters and enhancers for RPSAP9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I076607 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.2 +216.2 216231 14 ZFP64 ZNF140 MAX CEBPG ZNF697 POLR2A SCRT2 ATF7 MAFK SCRT1 GCNT1 RPSAP9 PRUNE2 LOC105376095 GC09P076757
GH09I076571 Enhancer 0.7 ENCODE dbSUPER 11.2 +173.3 173301 1.1 CBX8 RNF2 MAX RUNX3 RPSAP9 PPIAP87 LOC105376095
GH09I076392 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.8 -4.0 -4006 3.2 PKNOX1 CLOCK FOXA2 ARID4B SIN3A DMAP1 IRF4 YY1 ZNF143 SP3 RFK GCNT1 RPSAP9
GH09I076529 Enhancer 0.2 dbSUPER 6.6 +131.1 131140 0.6 RPSAP9 GCNT1 PIR37722 LOC105376093 PPIAP87
GH09I076402 Enhancer 1 Ensembl ENCODE 0.8 +4.9 4883 1.2 CTCF PKNOX1 IRF2 MAX DMAP1 BATF RAD21 YY1 STAT2 SMC3 RPSAP9 PIR58613
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP9 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPSAP9 gene promoter:

Genomic Locations for RPSAP9 Gene

Genomic Locations for RPSAP9 Gene
chr9:76,398,599-76,400,038
(GRCh38/hg38)
Size:
1,440 bases
Orientation:
Plus strand
chr9:79,013,515-79,014,954
(GRCh37/hg19)

Genomic View for RPSAP9 Gene

Genes around RPSAP9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP9 Gene

Proteins for RPSAP9 Gene

Post-translational modifications for RPSAP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP9 Gene

Domains & Families for RPSAP9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP9 Gene

Function for RPSAP9 Gene

Phenotypes From GWAS Catalog for RPSAP9 Gene

genes like me logo Genes that share phenotypes with RPSAP9: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP9 Gene

Localization for RPSAP9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP9 Gene

Pathways & Interactions for RPSAP9 Gene

SuperPathways for RPSAP9 Gene

No Data Available

Interacting Proteins for RPSAP9 Gene

Gene Ontology (GO) - Biological Process for RPSAP9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP9 Gene

Drugs & Compounds for RPSAP9 Gene

No Compound Related Data Available

Transcripts for RPSAP9 Gene

mRNA/cDNA for RPSAP9 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP9 Gene

Ribosomal protein SA pseudogene 9:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP9 Gene

No ASD Table

Relevant External Links for RPSAP9 Gene

GeneLoc Exon Structure for
RPSAP9
ECgene alternative splicing isoforms for
RPSAP9

Expression for RPSAP9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP9 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP9 Gene

This gene is overexpressed in Testis (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of RPSAP9 Gene:

RPSAP9

SOURCE GeneReport for Unigene cluster for RPSAP9 Gene:

Hs.655646
genes like me logo Genes that share expression patterns with RPSAP9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP9 Gene

Orthologs for RPSAP9 Gene

Evolution for RPSAP9 Gene

ENSEMBL:
Gene Tree for RPSAP9 (if available)
TreeFam:
Gene Tree for RPSAP9 (if available)

No data available for Orthologs for RPSAP9 Gene

Paralogs for RPSAP9 Gene

No data available for Paralogs for RPSAP9 Gene

Variants for RPSAP9 Gene

Sequence variations from dbSNP and Humsavar for RPSAP9 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1001298369 -- 76,400,323(+) T/A downstream_transcript_variant
rs1002019512 -- 76,396,687(+) C/T upstream_transcript_variant
rs1002280892 -- 76,399,457(+) G/A non_coding_transcript_variant
rs1002465447 -- 76,397,766(+) C/T upstream_transcript_variant
rs1002617738 -- 76,398,140(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPSAP9 Gene

Variant ID Type Subtype PubMed ID
nsv6570 CNV insertion 18451855
nsv972402 CNV duplication 23825009

Additional Variant Information for RPSAP9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPSAP9 Gene

Disorders for RPSAP9 Gene

Additional Disease Information for RPSAP9

No disorders were found for RPSAP9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP9 Gene

Publications for RPSAP9 Gene

  1. Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes. (PMID: 21546767) Murea M … Freedman BI (American journal of nephrology 2011) 3 44 58
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  3. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for RPSAP9 Gene

Sources for RPSAP9 Gene

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