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Aliases for RPSAP62 Gene

Subcategory (RNA class) for RPSAP62 Gene

lncRNA

Aliases for RPSAP62 Gene

  • Ribosomal Protein SA Pseudogene 62 2 3 5
  • RPSA_32_1778 3

External Ids for RPSAP62 Gene

ORGUL Members for RPSAP62 Gene

Previous GeneCards Identifiers for RPSAP62 Gene

  • GC0XP053371
  • GC0XP053355
  • GC0XP053357
  • GC0XP053360

Summaries for RPSAP62 Gene

GeneCards Summary for RPSAP62 Gene

RPSAP62 (Ribosomal Protein SA Pseudogene 62) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPSAP62 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP62 Gene

Genomics for RPSAP62 Gene

Regulatory Elements for RPSAP62 Gene

Enhancers for RPSAP62 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH052933 2 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -388.1 -388052 2 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 ZNF143 ZNF207 DEK SSXP5 SSX7 RPSAP62 XAGE1A XAGE1B SPANXN5 IQSEC2 TSPYL2 FAM156A KDM5C
GH0XH054177 1.5 FANTOM5 Ensembl ENCODE 14.6 +857.7 857712 6 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 ZNF143 FOS RUNX3 DEK RPL7AP71 RPSAP62 TSR2 ENSG00000233250 FAM120C RPL37P24
GH0XH053223 1.1 ENCODE 14.7 -98.3 -98256 2 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 GPR173 FAM156B TSPYL2 ACTG1P10 KANTR RPSAP62 SSXP5 SSX7 XAGE1A XAGE1B
GH0XH053420 1.1 ENCODE 14.7 +99.3 99341 2 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 ZNF548 TSPYL2 GPR173 SMC1A RPSAP62 XAGE1A XAGE1B SSX7 SSXP5 RPL7AP71 ACTG1P10
GH0XH054042 1.1 ENCODE 14.6 +721.4 721402 3 PKNOX1 FOXA2 ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF143 KDM5C PHF8 ACTG1P10 SMC1A ENSG00000233250 TSPYL2 APEX2 GPR173 KANTR MAGED2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP62 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP62 Gene

Chromosome:
X
Start:
53,322,990 bp from pter
End:
53,323,822 bp from pter
Size:
833 bases
Orientation:
Plus strand

Genomic View for RPSAP62 Gene

Genes around RPSAP62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP62 Gene

Proteins for RPSAP62 Gene

Post-translational modifications for RPSAP62 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP62 Gene

Domains & Families for RPSAP62 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP62 Gene

Function for RPSAP62 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPSAP62
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP62 Gene

Localization for RPSAP62 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP62 Gene

Pathways & Interactions for RPSAP62 Gene

SuperPathways for RPSAP62 Gene

No Data Available

Interacting Proteins for RPSAP62 Gene

Gene Ontology (GO) - Biological Process for RPSAP62 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP62 Gene

Drugs & Compounds for RPSAP62 Gene

No Compound Related Data Available

Transcripts for RPSAP62 Gene

mRNA/cDNA for RPSAP62 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPSAP62
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP62 Gene

No ASD Table

Relevant External Links for RPSAP62 Gene

GeneLoc Exon Structure for
RPSAP62
ECgene alternative splicing isoforms for
RPSAP62

Expression for RPSAP62 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP62 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP62 Gene:

RPSAP62
genes like me logo Genes that share expression patterns with RPSAP62: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP62 Gene

Orthologs for RPSAP62 Gene

Evolution for RPSAP62 Gene

ENSEMBL:
Gene Tree for RPSAP62 (if available)
TreeFam:
Gene Tree for RPSAP62 (if available)

No data available for Orthologs for RPSAP62 Gene

Paralogs for RPSAP62 Gene

No data available for Paralogs for RPSAP62 Gene

Variants for RPSAP62 Gene

Relevant External Links for RPSAP62 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP62

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP62 Gene

Disorders for RPSAP62 Gene

No disorders were found for RPSAP62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP62 Gene

Publications for RPSAP62 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPSAP62 Gene

Sources for RPSAP62 Gene

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