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Aliases for RPSAP56 Gene

Aliases for RPSAP56 Gene

  • Ribosomal Protein SA Pseudogene 56 2 3
  • RPSA_23_1496 3
  • AC092128.1 5

External Ids for RPSAP56 Gene

Previous GeneCards Identifiers for RPSAP56 Gene

  • GC16U900958

Summaries for RPSAP56 Gene

GeneCards Summary for RPSAP56 Gene

RPSAP56 (Ribosomal Protein SA Pseudogene 56) is a Pseudogene.

Additional gene information for RPSAP56 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP56 Gene

Genomics for RPSAP56 Gene

GeneHancer (GH) Regulatory Elements for RPSAP56 Gene

Promoters and enhancers for RPSAP56 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I073945 Enhancer 0.4 UCNEbase 0.8 -4.2 -4167 0.2 RPSAP56 ENSG00000279420 LOC101928035
GH16I073949 Enhancer 0.7 ENCODE 0.4 -8.2 -8153 1.1 SMARCE1 SMARCC1 JUN MAX CEBPB FEZF1 EP300 OSR2 JUND CREB1 ENSG00000259972 RPSAP56 ENSG00000279420 LOC101928035
GH16I074025 Enhancer 0.7 ENCODE 0.2 -84.7 -84721 1 NCOA3 SUZ12 BMI1 E4F1 FOXA1 ATM MTA3 ZNF512B NONO HDAC2 ENSG00000214331 ENSG00000207525 RFWD3 GLG1 ENSG00000279420 RPSAP56 LOC101928035
GH16I073951 Enhancer 0.3 ENCODE 0.4 -9.8 -9795 1 POLR2A RPSAP56 ENSG00000279420 LOC101928035
GH16I073997 Enhancer 0.6 ENCODE 0.2 -55.3 -55336 0.2 SOX13 GATAD2A FOXA2 NFIA FOXA3 MIER2 CEBPG PPARG SKI ZGPAT RPSAP56 ENSG00000279420 LOC101928035
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP56 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP56 Gene

Genomic Locations for RPSAP56 Gene
chr16:73,940,567-73,941,781
(GRCh38/hg38)
Size:
1,215 bases
Orientation:
Minus strand
chr16:73,974,466-73,975,501
(GRCh37/hg19)

Genomic View for RPSAP56 Gene

Genes around RPSAP56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP56 Gene

Proteins for RPSAP56 Gene

Post-translational modifications for RPSAP56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP56 Gene

Domains & Families for RPSAP56 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP56 Gene

Function for RPSAP56 Gene

Phenotypes From GWAS Catalog for RPSAP56 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP56 Gene

Localization for RPSAP56 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP56 Gene

Pathways & Interactions for RPSAP56 Gene

SuperPathways for RPSAP56 Gene

No Data Available

Interacting Proteins for RPSAP56 Gene

Gene Ontology (GO) - Biological Process for RPSAP56 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP56 Gene

Drugs & Compounds for RPSAP56 Gene

No Compound Related Data Available

Transcripts for RPSAP56 Gene

mRNA/cDNA for RPSAP56 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP56 Gene

No ASD Table

Relevant External Links for RPSAP56 Gene

GeneLoc Exon Structure for
RPSAP56
ECgene alternative splicing isoforms for
RPSAP56

Expression for RPSAP56 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP56 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP56 Gene

This gene is overexpressed in Testis (x32.3).

NURSA nuclear receptor signaling pathways regulating expression of RPSAP56 Gene:

RPSAP56
genes like me logo Genes that share expression patterns with RPSAP56: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP56 Gene

Orthologs for RPSAP56 Gene

Evolution for RPSAP56 Gene

ENSEMBL:
Gene Tree for RPSAP56 (if available)
TreeFam:
Gene Tree for RPSAP56 (if available)

No data available for Orthologs for RPSAP56 Gene

Paralogs for RPSAP56 Gene

No data available for Paralogs for RPSAP56 Gene

Variants for RPSAP56 Gene

Additional Variant Information for RPSAP56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP56 Gene

Disorders for RPSAP56 Gene

Additional Disease Information for RPSAP56

Genetic Association Database
(GAD)

No disorders were found for RPSAP56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP56 Gene

Publications for RPSAP56 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis. (PMID: 22310353) Man M … Garcia JG (The pharmacogenomics journal 2013) 44 58

Products for RPSAP56 Gene

Sources for RPSAP56 Gene

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