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Aliases for RPSAP54 Gene

Aliases for RPSAP54 Gene

  • Ribosomal Protein SA Pseudogene 54 2 3 5
  • RPSA_26_1300 3

External Ids for RPSAP54 Gene

Previous GeneCards Identifiers for RPSAP54 Gene

  • GC13U900627
  • GC13P021537
  • GC13P021538

Summaries for RPSAP54 Gene

GeneCards Summary for RPSAP54 Gene

RPSAP54 (Ribosomal Protein SA Pseudogene 54) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP54 Gene

Genomics for RPSAP54 Gene

Regulatory Elements for RPSAP54 Gene

Enhancers for RPSAP54 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F020170 0.8 FANTOM5 ENCODE 5 -790.0 -790032 0.9 ZNF217 GATA3 JUND FOS TCF7L2 RPSAP54 PSPC1 GJA3 PPIAP28
GH13F020969 0.2 Ensembl 0.4 +8.1 8068 0.2 FOS FOSL2 RPSAP54 LATS2-AS1
GH13F020975 0.2 ENCODE 0.4 +14.2 14183 0.2 RPSAP54 LATS2-AS1
GH13F020993 0.2 ENCODE 0.3 +32.5 32473 1.0 HDAC1 ATF1 TBL1XR1 SIN3A CHAMP1 SCRT2 FOS CREM ZBTB2 CEBPB RNU4-9P ENSG00000252128 SAP18 LATS2-AS1 RPSAP54
GH13F020996 1.2 Ensembl ENCODE 0.3 +36.8 36784 2.7 KLF1 JUN BHLHE40 MAFG SIN3A FEZF1 ZNF316 JUND SMARCA4 ZNF341 LATS2-AS1 RPSAP54
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPSAP54 on UCSC Golden Path with GeneCards custom track

Promoters for RPSAP54 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001782737 166 400 SOX13 GATAD2A ELF3 SOX5 PKNOX1 NFIA SAP130 NRF1 ARID4B HMG20A

Genomic Location for RPSAP54 Gene

Chromosome:
13
Start:
20,961,234 bp from pter
End:
20,962,268 bp from pter
Size:
1,035 bases
Orientation:
Plus strand

Genomic View for RPSAP54 Gene

Genes around RPSAP54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP54 Gene

Proteins for RPSAP54 Gene

Post-translational modifications for RPSAP54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP54 Gene

Domains & Families for RPSAP54 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP54 Gene

Function for RPSAP54 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP54 Gene

Localization for RPSAP54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP54 Gene

Pathways & Interactions for RPSAP54 Gene

SuperPathways for RPSAP54 Gene

No Data Available

Interacting Proteins for RPSAP54 Gene

Gene Ontology (GO) - Biological Process for RPSAP54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP54 Gene

Transcripts for RPSAP54 Gene

mRNA/cDNA for RPSAP54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP54 Gene

No ASD Table

Relevant External Links for RPSAP54 Gene

GeneLoc Exon Structure for
RPSAP54
ECgene alternative splicing isoforms for
RPSAP54

Expression for RPSAP54 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP54 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP54 Gene:

RPSAP54
genes like me logo Genes that share expression patterns with RPSAP54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPSAP54 Gene

Orthologs for RPSAP54 Gene

Evolution for RPSAP54 Gene

ENSEMBL:
Gene Tree for RPSAP54 (if available)
TreeFam:
Gene Tree for RPSAP54 (if available)

No data available for Orthologs for RPSAP54 Gene

Paralogs for RPSAP54 Gene

No data available for Paralogs for RPSAP54 Gene

Variants for RPSAP54 Gene

Relevant External Links for RPSAP54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP54 Gene

Disorders for RPSAP54 Gene

No disorders were found for RPSAP54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP54 Gene

Publications for RPSAP54 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPSAP54 Gene

Sources for RPSAP54 Gene

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