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Aliases for RPSAP54 Gene

Aliases for RPSAP54 Gene

  • Ribosomal Protein SA Pseudogene 54 2 3 5
  • RPSA_26_1300 3

External Ids for RPSAP54 Gene

Previous GeneCards Identifiers for RPSAP54 Gene

  • GC13U900627
  • GC13P021537
  • GC13P021538

Summaries for RPSAP54 Gene

GeneCards Summary for RPSAP54 Gene

RPSAP54 (Ribosomal Protein SA Pseudogene 54) is a Pseudogene.

Additional gene information for RPSAP54 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP54 Gene

Genomics for RPSAP54 Gene

GeneHancer (GH) Regulatory Elements for RPSAP54 Gene

Promoters and enhancers for RPSAP54 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I020960 Enhancer 0.7 Ensembl 550.8 0.0 -43 0.4 ELF3 MEIS2 SOX13 TFAP4 PKNOX1 SAP130 ARID4B RARA GATAD2A SOX5 RPSAP54 PPIAP27
GH13I020170 Enhancer 0.8 FANTOM5 ENCODE 5 -790.0 -790032 0.9 ZNF217 JUND GATA3 FOS FOXA1 TCF7L2 RPSAP54 PSPC1 PPIAP28 GJA3
GH13I020993 Enhancer 1 ENCODE dbSUPER 0.3 +32.5 32472 1 ATF1 NFIB TCF12 EGR1 SCRT2 FOS ATF7 CREM CEBPB REST RNU4-9P ENSG00000252128 SAP18 LATS2-AS1 RPSAP54 LATS2
GH13I020996 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +36.8 36784 2.7 CTCF KLF1 JUND POLR2A JUN ZNF341 ZBTB33 LATS2-AS1 RPSAP54 LATS2
GH13I020990 Enhancer 0.4 dbSUPER 0.3 +30.3 30250 1.7 CTCF ZBTB33 ENSG00000252128 SAP18 LATS2-AS1 RPSAP54 LATS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP54 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP54 Gene

Genomic Locations for RPSAP54 Gene
chr13:20,961,234-20,962,268
(GRCh38/hg38)
Size:
1,035 bases
Orientation:
Plus strand
chr13:21,535,373-21,536,407
(GRCh37/hg19)

Genomic View for RPSAP54 Gene

Genes around RPSAP54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP54 Gene

Proteins for RPSAP54 Gene

Post-translational modifications for RPSAP54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP54 Gene

Domains & Families for RPSAP54 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP54 Gene

Function for RPSAP54 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP54 Gene

Localization for RPSAP54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP54 Gene

Pathways & Interactions for RPSAP54 Gene

SuperPathways for RPSAP54 Gene

No Data Available

Interacting Proteins for RPSAP54 Gene

Gene Ontology (GO) - Biological Process for RPSAP54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP54 Gene

Drugs & Compounds for RPSAP54 Gene

No Compound Related Data Available

Transcripts for RPSAP54 Gene

mRNA/cDNA for RPSAP54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP54 Gene

No ASD Table

Relevant External Links for RPSAP54 Gene

GeneLoc Exon Structure for
RPSAP54
ECgene alternative splicing isoforms for
RPSAP54

Expression for RPSAP54 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP54 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP54 Gene:

RPSAP54
genes like me logo Genes that share expression patterns with RPSAP54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP54 Gene

Orthologs for RPSAP54 Gene

Evolution for RPSAP54 Gene

ENSEMBL:
Gene Tree for RPSAP54 (if available)
TreeFam:
Gene Tree for RPSAP54 (if available)

No data available for Orthologs for RPSAP54 Gene

Paralogs for RPSAP54 Gene

No data available for Paralogs for RPSAP54 Gene

Variants for RPSAP54 Gene

Additional Variant Information for RPSAP54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP54 Gene

Disorders for RPSAP54 Gene

No disorders were found for RPSAP54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP54 Gene

Publications for RPSAP54 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPSAP54 Gene

Sources for RPSAP54 Gene

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