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Aliases for RPSAP53 Gene

Aliases for RPSAP53 Gene

  • Ribosomal Protein SA Pseudogene 53 2 3 5
  • RPSA_19_1317 3

External Ids for RPSAP53 Gene

Previous GeneCards Identifiers for RPSAP53 Gene

  • GC13M066739
  • GC13M067841

Summaries for RPSAP53 Gene

GeneCards Summary for RPSAP53 Gene

RPSAP53 (Ribosomal Protein SA Pseudogene 53) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP53 Gene

Genomics for RPSAP53 Gene

Regulatory Elements for RPSAP53 Gene

Enhancers for RPSAP53 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G067284 0.7 dbSUPER 0.4 -17.5 -17489 1.1 ZNF202 ZNF654 ZFP64 ZBTB11 ZNF426 ZNF394 ZNF781 ZNF518A ZNF697 ZNF555 LINC00364 RPSAP53 LOC105370246
GH13G067283 0.7 dbSUPER 0.4 -16.0 -16009 1.2 ELF3 SOX13 FOXA2 ZNF644 NCOR1 MAFK HOMEZ CREM GATAD2A SOX5 LINC00364 RPSAP53 LOC105370246
GH13G067280 0.6 dbSUPER 0.4 -14.1 -14122 2.3 PKNOX1 POLR2A FOXK2 ARNT SMARCA4 EP300 LINC00364 RPSAP53 LOC105370246
GH13G067277 0.6 ENCODE dbSUPER 0.4 -10.8 -10817 1.6 MAFK LINC00364 RPSAP53 LOC105370246
GH13G067299 0.5 ENCODE 0.3 -31.9 -31865 1.7 MAFF JUND FOS MAFK LOC105370246 RPSAP53
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP53 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP53 Gene

Chromosome:
13
Start:
67,266,755 bp from pter
End:
67,267,780 bp from pter
Size:
1,026 bases
Orientation:
Minus strand

Genomic View for RPSAP53 Gene

Genes around RPSAP53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP53 Gene

Proteins for RPSAP53 Gene

Post-translational modifications for RPSAP53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP53 Gene

Domains & Families for RPSAP53 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP53 Gene

Function for RPSAP53 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP53 Gene

Localization for RPSAP53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP53 Gene

Pathways & Interactions for RPSAP53 Gene

SuperPathways for RPSAP53 Gene

No Data Available

Interacting Proteins for RPSAP53 Gene

Gene Ontology (GO) - Biological Process for RPSAP53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP53 Gene

Drugs & Compounds for RPSAP53 Gene

No Compound Related Data Available

Transcripts for RPSAP53 Gene

mRNA/cDNA for RPSAP53 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP53 Gene

No ASD Table

Relevant External Links for RPSAP53 Gene

GeneLoc Exon Structure for
RPSAP53
ECgene alternative splicing isoforms for
RPSAP53

Expression for RPSAP53 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP53 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP53 Gene:

RPSAP53
genes like me logo Genes that share expression patterns with RPSAP53: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP53 Gene

Orthologs for RPSAP53 Gene

Evolution for RPSAP53 Gene

ENSEMBL:
Gene Tree for RPSAP53 (if available)
TreeFam:
Gene Tree for RPSAP53 (if available)

No data available for Orthologs for RPSAP53 Gene

Paralogs for RPSAP53 Gene

No data available for Paralogs for RPSAP53 Gene

Variants for RPSAP53 Gene

Relevant External Links for RPSAP53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP53 Gene

Disorders for RPSAP53 Gene

Relevant External Links for RPSAP53

Genetic Association Database (GAD)
RPSAP53

No disorders were found for RPSAP53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP53 Gene

Publications for RPSAP53 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association identifies the ABO blood group as a major locus associated with serum levels of soluble E-selectin. (PMID: 19729612) Paterson A.D. … Bull S.B. (Arterioscler. Thromb. Vasc. Biol. 2009) 46 64
  3. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D. … Mitchell G.F. (BMC Med. Genet. 2007) 46 64

Products for RPSAP53 Gene

Sources for RPSAP53 Gene

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