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Aliases for RPSAP52 Gene

Aliases for RPSAP52 Gene

  • Ribosomal Protein SA Pseudogene 52 2 3 5
  • RPSA_17_1251 3

External Ids for RPSAP52 Gene

Previous GeneCards Identifiers for RPSAP52 Gene

  • GC12M064439
  • GC12M066151
  • GC12M063204

Summaries for RPSAP52 Gene

GeneCards Summary for RPSAP52 Gene

RPSAP52 (Ribosomal Protein SA Pseudogene 52) is a Pseudogene.

Additional gene information for RPSAP52 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP52 Gene

Genomics for RPSAP52 Gene

GeneHancer (GH) Regulatory Elements for RPSAP52 Gene

Promoters and enhancers for RPSAP52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I065821 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 554.9 +0.6 605 10.3 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF213 RPSAP52 HMGA2 GC12M065825 LEMD3 LOC100129940 TMBIM4 ENSG00000250280 ENSG00000256083 ENSG00000277945
GH12I065888 Enhancer 2.1 UCNEbase FANTOM5 Ensembl ENCODE dbSUPER 11.3 -67.9 -67894 12 PKNOX1 FOXA2 MLX FEZF1 ZNF121 ZNF213 ATF7 FOS SP3 REST ENSG00000256083 RPSAP52 HMGA2 IRAK3 GC12P065889
GH12I065875 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 11.3 -54.8 -54795 13.1 PKNOX1 ZNF133 SIN3A FEZF1 ZNF213 ATF7 KLF7 RUNX3 KLF13 JUNB LOC100129940 RPSAP52 HMGA2 ENSG00000256083 GC12P065875 GC12P065874
GH12I065924 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -99.6 -99611 3.7 ELF3 FOXA2 FEZF1 SLC30A9 ATF7 CREM MIXL1 HMG20B SP5 KAT8 ENSG00000256083 LOC100129940 RPSAP52 HMGA2 IRAK3 HELB GC12P065889
GH12I065740 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.9 +85.2 85210 2.9 ZNF133 MZF1 ZBTB40 ZNF2 ZNF48 ZNF335 GLIS2 ZNF213 EGR1 ZNF366 LEMD3 HMGA2 RPSAP52 GC12M065700 GC12P065791
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP52 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPSAP52 gene promoter:

Genomic Locations for RPSAP52 Gene

Genomic Locations for RPSAP52 Gene
chr12:65,758,020-65,826,997
(GRCh38/hg38)
Size:
68,978 bases
Orientation:
Minus strand
chr12:66,151,800-66,220,754
(GRCh37/hg19)

Genomic View for RPSAP52 Gene

Genes around RPSAP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP52 Gene

Proteins for RPSAP52 Gene

Post-translational modifications for RPSAP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP52 Gene

Domains & Families for RPSAP52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP52 Gene

Function for RPSAP52 Gene

Phenotypes From GWAS Catalog for RPSAP52 Gene

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP52 Gene

Localization for RPSAP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP52 Gene

Pathways & Interactions for RPSAP52 Gene

SuperPathways for RPSAP52 Gene

No Data Available

Interacting Proteins for RPSAP52 Gene

Gene Ontology (GO) - Biological Process for RPSAP52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP52 Gene

Drugs & Compounds for RPSAP52 Gene

No Compound Related Data Available

Transcripts for RPSAP52 Gene

mRNA/cDNA for RPSAP52 Gene

(4) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP52 Gene

Ribosomal protein SA pseudogene 52:
Representative Sequences:

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Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP52 Gene

No ASD Table

Relevant External Links for RPSAP52 Gene

GeneLoc Exon Structure for
RPSAP52
ECgene alternative splicing isoforms for
RPSAP52

Expression for RPSAP52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP52 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP52 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.3).

NURSA nuclear receptor signaling pathways regulating expression of RPSAP52 Gene:

RPSAP52

SOURCE GeneReport for Unigene cluster for RPSAP52 Gene:

Hs.558686
genes like me logo Genes that share expression patterns with RPSAP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP52 Gene

Orthologs for RPSAP52 Gene

Evolution for RPSAP52 Gene

ENSEMBL:
Gene Tree for RPSAP52 (if available)
TreeFam:
Gene Tree for RPSAP52 (if available)

No data available for Orthologs for RPSAP52 Gene

Paralogs for RPSAP52 Gene

No data available for Paralogs for RPSAP52 Gene

Variants for RPSAP52 Gene

Sequence variations from dbSNP and Humsavar for RPSAP52 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000062062 -- 65,783,065(-) A/G intron_variant
rs1000103459 -- 65,816,333(-) T/C intron_variant
rs1000118600 -- 65,773,892(-) G/T intron_variant
rs1000147457 -- 65,776,334(-) A/G intron_variant
rs1000168536 -- 65,823,847(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RPSAP52 Gene

Variant ID Type Subtype PubMed ID
dgv1521n100 CNV gain 25217958
esv2210361 CNV deletion 18987734
esv2614260 CNV deletion 19546169
esv2676501 CNV deletion 23128226
esv2745997 CNV deletion 23290073
esv275418 CNV gain+loss 21479260
esv3549326 CNV deletion 23714750
esv6997 CNV gain 19470904
nsv1134236 CNV deletion 24896259
nsv507649 OTHER sequence alteration 20534489
nsv975507 CNV duplication 23825009

Additional Variant Information for RPSAP52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPSAP52 Gene

Disorders for RPSAP52 Gene

Additional Disease Information for RPSAP52

No disorders were found for RPSAP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP52 Gene

Publications for RPSAP52 Gene

  1. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight BF … GIANT Consortium (Nature genetics 2010) 3 44 58
  2. Genome-wide association reveals genetic effects on human Aβ42 and τ protein levels in cerebrospinal fluids: a case control study. (PMID: 20932310) Han MR … Alzheimer's Disease Neuroimaging Initiative (BMC neurology 2010) 3 44 58
  3. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  4. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. (PMID: 24509480) DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) Consortium … Morris AP (Nature genetics 2014) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPSAP52 Gene

Sources for RPSAP52 Gene

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