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Aliases for RPSAP52 Gene

Aliases for RPSAP52 Gene

  • Ribosomal Protein SA Pseudogene 52 2 3
  • RPSA_17_1251 3

External Ids for RPSAP52 Gene

Previous GeneCards Identifiers for RPSAP52 Gene

  • GC12M064439
  • GC12M066151
  • GC12M063204

Summaries for RPSAP52 Gene

GeneCards Summary for RPSAP52 Gene

RPSAP52 (Ribosomal Protein SA Pseudogene 52) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP52 Gene

Genomics for RPSAP52 Gene

Regulatory Elements for RPSAP52 Gene

Genomic Location for RPSAP52 Gene

65,758,020 bp from pter
65,826,997 bp from pter
68,978 bases
Minus strand

Genomic View for RPSAP52 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPSAP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP52 Gene

Proteins for RPSAP52 Gene

Post-translational modifications for RPSAP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP52 Gene

Domains for RPSAP52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP52 Gene

Function for RPSAP52 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPSAP52 Gene

Localization for RPSAP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP52 Gene

Pathways for RPSAP52 Gene

SuperPathways for RPSAP52 Gene

No Data Available

Interacting Proteins for RPSAP52 Gene

Gene Ontology (GO) - Biological Process for RPSAP52 Gene


No data available for Pathways by source for RPSAP52 Gene

Transcripts for RPSAP52 Gene

mRNA/cDNA for RPSAP52 Gene

(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP52 Gene

Ribosomal protein SA pseudogene 52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP52 Gene

No ASD Table

Relevant External Links for RPSAP52 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RPSAP52 Gene

mRNA expression in normal human tissues for RPSAP52 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RPSAP52 Gene

This gene is overexpressed in Adipose - Subcutaneous (5.3).

SOURCE GeneReport for Unigene cluster for RPSAP52 Gene Hs.558686

genes like me logo Genes that share expressions with RPSAP52: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for RPSAP52 Gene

Orthologs for RPSAP52 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RPSAP52 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Rpsa-ps9 16
Species with no ortholog for RPSAP52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPSAP52 Gene

Gene Tree for RPSAP52 (if available)
Gene Tree for RPSAP52 (if available)

Paralogs for RPSAP52 Gene

No data available for Paralogs for RPSAP52 Gene

Variants for RPSAP52 Gene

Sequence variations from dbSNP and Humsavar for RPSAP52 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs971778 -- 65,788,774(-) TGACC(A/G)CTGAA intron-variant
rs971779 -- 65,788,675(-) ACATA(C/T)GTAAA intron-variant
rs971780 -- 65,788,633(-) AGCTT(A/G)TTATC intron-variant
rs1122590 -- 65,781,076(+) ATGTT(A/G)AACAA intron-variant
rs1154590 -- 65,785,381(-) tgact(C/G)ccctt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPSAP52 Gene

Variant ID Type Subtype PubMed ID
esv275418 CNV Gain+Loss 21479260
esv2614260 CNV Deletion 19546169
esv2210361 CNV Deletion 18987734
esv2745997 CNV Deletion 23290073
esv2676501 CNV Deletion 23128226
nsv507649 CNV Insertion 20534489

Relevant External Links for RPSAP52 Gene

HapMap Linkage Disequilibrium report

PCR Panel Products

  • Copy Number PCR Panels: for RPSAP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPSAP52 Gene

Disorders for RPSAP52 Gene

Relevant External Links for RPSAP52

Genetic Association Database (GAD)

No disorders were found for RPSAP52 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for RPSAP52 Gene

Publications for RPSAP52 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 3 48
  3. Genome-wide association reveals genetic effects on human AI^42 and I8 protein levels in cerebrospinal fluids: a case control study. (PMID: 20932310) Han M.R. … Wang L.S. (BMC Neurol 2010) 3 48
  4. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. (PMID: 24509480) . … Morris A.P. (Nat. Genet. 2014) 3
  5. Characteristics of a multicopy gene family predominantly consisting of processed pseudogenes. (PMID: 2543954) van den Ouweland A.M.W. … van de Ven W.J.M. (Nucleic Acids Res. 1989) 3

Products for RPSAP52 Gene

  • Copy Number PCR Panels: for RPSAP52
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPSAP52
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RPSAP52
    • Block miRNA regulation of RPSAP52 using miScript Target Protectors

    Sources for RPSAP52 Gene

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