Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPSAP52 Gene

Aliases for RPSAP52 Gene

  • Ribosomal Protein SA Pseudogene 52 2 3 5
  • RPSA_17_1251 3

External Ids for RPSAP52 Gene

Previous GeneCards Identifiers for RPSAP52 Gene

  • GC12M064439
  • GC12M066151
  • GC12M063204

Summaries for RPSAP52 Gene

GeneCards Summary for RPSAP52 Gene

RPSAP52 (Ribosomal Protein SA Pseudogene 52) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP52 Gene

Genomics for RPSAP52 Gene

Regulatory Elements for RPSAP52 Gene

Enhancers for RPSAP52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G065888 2.9 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -67.9 -67895 12.0 HNRNPUL1 PKNOX1 FOXA2 ATF1 MLX SIN3A FEZF1 ZNF121 GATA2 FOS ENSG00000256083 RPSAP52 HMGA2 IRAK3 GC12P065889
GH12G065924 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -99.6 -99611 3.7 PKNOX1 FOXA2 ARNT FEZF1 ZNF2 SLC30A9 KLF7 FOS SP5 YY2 ENSG00000256083 LOC100129940 RPSAP52 HMGA2 LEMD3 IRAK3 HELB GC12P065889
GH12G065875 1.5 Ensembl ENCODE dbSUPER 11.3 -54.8 -54796 13.1 PKNOX1 ZNF133 SIN3A FEZF1 GATA2 KLF7 FOS JUNB TSHZ1 REST RPSAP52 HMGA2 ENSG00000256083 LOC100129940 GC12P065874 GC12P065875
GH12G065740 1.5 FANTOM5 Ensembl ENCODE 10.9 +85.2 85210 2.9 FUS ZNF133 ZBTB40 ZNF2 ZNF48 GLIS2 EGR1 ZNF366 PCBP1 ZNF391 HMGA2 RPSAP52 GC12M065700 GC12P065791
GH12G065778 1 Ensembl ENCODE 15.8 +48.1 48087 1.8 JUN ZSCAN4 TEAD4 DPF2 ZEB1 ZNF7 HIC1 CTBP1 JUND HDAC2 RPSAP52 HMGA2 GC12P065791 GC12M065700
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP52 on UCSC Golden Path with GeneCards custom track

Promoters for RPSAP52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000053339 1297 3401 ARID4B SIN3A DMAP1 ZNF2 ZNF302 ZNF548 FOS ZNF263 SP3 MXD4

Genomic Location for RPSAP52 Gene

Chromosome:
12
Start:
65,758,020 bp from pter
End:
65,826,997 bp from pter
Size:
68,978 bases
Orientation:
Minus strand

Genomic View for RPSAP52 Gene

Genes around RPSAP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP52 Gene

Proteins for RPSAP52 Gene

Post-translational modifications for RPSAP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP52 Gene

Domains & Families for RPSAP52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP52 Gene

Function for RPSAP52 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP52 Gene

Localization for RPSAP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP52 Gene

Pathways & Interactions for RPSAP52 Gene

SuperPathways for RPSAP52 Gene

No Data Available

Interacting Proteins for RPSAP52 Gene

Gene Ontology (GO) - Biological Process for RPSAP52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP52 Gene

Drugs & Compounds for RPSAP52 Gene

No Compound Related Data Available

Transcripts for RPSAP52 Gene

mRNA/cDNA for RPSAP52 Gene

(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP52 Gene

Ribosomal protein SA pseudogene 52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP52 Gene

No ASD Table

Relevant External Links for RPSAP52 Gene

GeneLoc Exon Structure for
RPSAP52
ECgene alternative splicing isoforms for
RPSAP52

Expression for RPSAP52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP52 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP52 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.3).

NURSA nuclear receptor signaling pathways regulating expression of RPSAP52 Gene:

RPSAP52

SOURCE GeneReport for Unigene cluster for RPSAP52 Gene:

Hs.558686
genes like me logo Genes that share expression patterns with RPSAP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP52 Gene

Orthologs for RPSAP52 Gene

Evolution for RPSAP52 Gene

ENSEMBL:
Gene Tree for RPSAP52 (if available)
TreeFam:
Gene Tree for RPSAP52 (if available)

No data available for Orthologs for RPSAP52 Gene

Paralogs for RPSAP52 Gene

No data available for Paralogs for RPSAP52 Gene

Variants for RPSAP52 Gene

Sequence variations from dbSNP and Humsavar for RPSAP52 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000062062 -- 65,783,065(+) AGACA(A/G)TGTTA intron-variant
rs1000103459 -- 65,816,333(+) TGGTA(C/T)AGCTG intron-variant
rs1000118600 -- 65,773,892(+) TGATT(G/T)TTTTC intron-variant
rs1000147457 -- 65,776,334(+) GAAAA(A/G)TTCAA intron-variant
rs1000168536 -- 65,823,847(+) CGCGC(C/T)CGCCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPSAP52 Gene

Variant ID Type Subtype PubMed ID
dgv1521n100 CNV gain 25217958
esv2210361 CNV deletion 18987734
esv2614260 CNV deletion 19546169
esv2676501 CNV deletion 23128226
esv2745997 CNV deletion 23290073
esv275418 CNV gain+loss 21479260
esv3549326 CNV deletion 23714750
esv6997 CNV gain 19470904
nsv1134236 CNV deletion 24896259
nsv507649 OTHER sequence alteration 20534489
nsv975507 CNV duplication 23825009

Relevant External Links for RPSAP52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPSAP52 Gene

Disorders for RPSAP52 Gene

Relevant External Links for RPSAP52

Genetic Association Database (GAD)
RPSAP52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPSAP52

No disorders were found for RPSAP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP52 Gene

Publications for RPSAP52 Gene

  1. Genome-wide association reveals genetic effects on human AI^42 and I8 protein levels in cerebrospinal fluids: a case control study. (PMID: 20932310) Han M.R. … Wang L.S. (BMC Neurol 2010) 3 46 64
  2. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 3 46 64
  3. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  4. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. (PMID: 24509480) . … Morris A.P. (Nat. Genet. 2014) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPSAP52 Gene

Sources for RPSAP52 Gene

Content
Loading form....