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Aliases for RPSAP52 Gene

Aliases for RPSAP52 Gene

  • Ribosomal Protein SA Pseudogene 52 2 3 5
  • RPSA_17_1251 3

External Ids for RPSAP52 Gene

Previous GeneCards Identifiers for RPSAP52 Gene

  • GC12M064439
  • GC12M066151
  • GC12M063204

Summaries for RPSAP52 Gene

GeneCards Summary for RPSAP52 Gene

RPSAP52 (Ribosomal Protein SA Pseudogene 52) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP52 Gene

Genomics for RPSAP52 Gene

Regulatory Elements for RPSAP52 Gene

Enhancers for RPSAP52 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RPSAP52 on UCSC Golden Path with GeneCards custom track

Promoters for RPSAP52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RPSAP52 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP52 Gene

Chromosome:
12
Start:
65,758,020 bp from pter
End:
65,826,997 bp from pter
Size:
68,978 bases
Orientation:
Minus strand

Genomic View for RPSAP52 Gene

Genes around RPSAP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP52 Gene

Proteins for RPSAP52 Gene

Post-translational modifications for RPSAP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP52 Gene

Domains & Families for RPSAP52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP52 Gene

Function for RPSAP52 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP52 Gene

Localization for RPSAP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP52 Gene

Pathways & Interactions for RPSAP52 Gene

SuperPathways for RPSAP52 Gene

No Data Available

Interacting Proteins for RPSAP52 Gene

Gene Ontology (GO) - Biological Process for RPSAP52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP52 Gene

Drugs & Compounds for RPSAP52 Gene

No Compound Related Data Available

Transcripts for RPSAP52 Gene

mRNA/cDNA for RPSAP52 Gene

(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP52 Gene

Ribosomal protein SA pseudogene 52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP52 Gene

No ASD Table

Relevant External Links for RPSAP52 Gene

GeneLoc Exon Structure for
RPSAP52
ECgene alternative splicing isoforms for
RPSAP52

Expression for RPSAP52 Gene

mRNA expression in normal human tissues for RPSAP52 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP52 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.3).

SOURCE GeneReport for Unigene cluster for RPSAP52 Gene Hs.558686

genes like me logo Genes that share expression patterns with RPSAP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RPSAP52 Gene

Orthologs for RPSAP52 Gene

Evolution for RPSAP52 Gene

ENSEMBL:
Gene Tree for RPSAP52 (if available)
TreeFam:
Gene Tree for RPSAP52 (if available)

No data available for Orthologs for RPSAP52 Gene

Paralogs for RPSAP52 Gene

No data available for Paralogs for RPSAP52 Gene

Variants for RPSAP52 Gene

Sequence variations from dbSNP and Humsavar for RPSAP52 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1993669 -- 65,796,373(-) CATCA(A/G)GAATG intron-variant
rs1993670 -- 65,796,045(-) CCTGG(A/G)AAAAT intron-variant
rs2085756 -- 65,818,262(+) ATCTA(G/T)TCTCC intron-variant
rs7134682 -- 65,774,371(+) TTATA(G/T)GTTGT intron-variant
rs2100752 -- 65,818,149(+) ttcaa(A/G)gcagc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPSAP52 Gene

Variant ID Type Subtype PubMed ID
esv275418 CNV Gain+Loss 21479260
esv2614260 CNV Deletion 19546169
esv2210361 CNV Deletion 18987734
esv2745997 CNV Deletion 23290073
esv2676501 CNV Deletion 23128226
nsv507649 CNV Insertion 20534489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for RPSAP52 Gene

Disorders for RPSAP52 Gene

Relevant External Links for RPSAP52

Genetic Association Database (GAD)
RPSAP52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPSAP52

No disorders were found for RPSAP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP52 Gene

Publications for RPSAP52 Gene

  1. Genome-wide association reveals genetic effects on human AI^42 and I8 protein levels in cerebrospinal fluids: a case control study. (PMID: 20932310) Han M.R. … Wang L.S. (BMC Neurol 2010) 3 48 67
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  3. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. (PMID: 24509480) . … Morris A.P. (Nat. Genet. 2014) 3
  4. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for RPSAP52 Gene

Sources for RPSAP52 Gene

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