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Aliases for RPSAP52 Gene

Aliases for RPSAP52 Gene

  • Ribosomal Protein SA Pseudogene 52 2 3 5
  • RPSA_17_1251 3

External Ids for RPSAP52 Gene

Previous GeneCards Identifiers for RPSAP52 Gene

  • GC12M064439
  • GC12M066151
  • GC12M063204

Summaries for RPSAP52 Gene

GeneCards Summary for RPSAP52 Gene

RPSAP52 (Ribosomal Protein SA Pseudogene 52) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP52 Gene

Genomics for RPSAP52 Gene

Regulatory Elements for RPSAP52 Gene

Enhancers for RPSAP52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F065888 2.6 FANTOM5 Ensembl ENCODE 11.3 -67.9 -67895 12.0 PKNOX1 ATF1 MLX SIN3A FEZF1 ZNF121 FOS SP3 TSHZ1 SSRP1 ENSG00000256083 RPSAP52 HMGA2 IRAK3 GC12P065889
GH12F065924 1.6 FANTOM5 Ensembl ENCODE 11.2 -100.9 -100904 7.0 PKNOX1 ATF1 MLX ARID4B FEZF1 DMAP1 ZNF2 ZNF48 SLC30A9 KLF7 ENSG00000256083 LOC100129940 RPSAP52 HMGA2 IRAK3 HELB GC12P065889
GH12F065740 1.5 FANTOM5 Ensembl ENCODE 10.9 +85.0 85018 3.2 ZNF133 ZNF48 ZNF2 GLIS2 ZNF366 ZNF391 CREM EGR2 ZNF202 SP3 LEMD3 HMGA2 RPSAP52 GC12M065700 GC12P065791
GH12F065778 0.9 Ensembl ENCODE 15.8 +48.1 48087 1.8 JUN TEAD4 DPF2 ZEB1 ZNF7 HIC1 JUND KDM1A FOS PRDM1 RPSAP52 HMGA2 GC12P065791 GC12M065700
GH12F065875 1.2 Ensembl ENCODE 11.3 -54.8 -54796 13.1 PKNOX1 ZNF133 SIN3A FEZF1 KLF7 JUNB REST TSHZ1 PBX2 WT1 RPSAP52 HMGA2 ENSG00000256083 LOC100129940 GC12P065874 GC12P065875
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP52 on UCSC Golden Path with GeneCards custom track

Promoters for RPSAP52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001778204 -1303 601 SAP130 MAFK
ENSR00000432193 1797 5201 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF302 ZNF548 FOS

Genomic Location for RPSAP52 Gene

Chromosome:
12
Start:
65,758,020 bp from pter
End:
65,826,997 bp from pter
Size:
68,978 bases
Orientation:
Minus strand

Genomic View for RPSAP52 Gene

Genes around RPSAP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP52 Gene

Proteins for RPSAP52 Gene

Post-translational modifications for RPSAP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP52 Gene

Domains & Families for RPSAP52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP52 Gene

Function for RPSAP52 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP52 Gene

Localization for RPSAP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP52 Gene

Pathways & Interactions for RPSAP52 Gene

SuperPathways for RPSAP52 Gene

No Data Available

Interacting Proteins for RPSAP52 Gene

Gene Ontology (GO) - Biological Process for RPSAP52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP52 Gene

Transcripts for RPSAP52 Gene

mRNA/cDNA for RPSAP52 Gene

(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPSAP52 Gene

Ribosomal protein SA pseudogene 52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP52 Gene

No ASD Table

Relevant External Links for RPSAP52 Gene

GeneLoc Exon Structure for
RPSAP52
ECgene alternative splicing isoforms for
RPSAP52

Expression for RPSAP52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP52 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP52 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.3).

NURSA nuclear receptor signaling pathways regulating expression of RPSAP52 Gene:

RPSAP52

SOURCE GeneReport for Unigene cluster for RPSAP52 Gene:

Hs.558686
genes like me logo Genes that share expression patterns with RPSAP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPSAP52 Gene

Orthologs for RPSAP52 Gene

Evolution for RPSAP52 Gene

ENSEMBL:
Gene Tree for RPSAP52 (if available)
TreeFam:
Gene Tree for RPSAP52 (if available)

No data available for Orthologs for RPSAP52 Gene

Paralogs for RPSAP52 Gene

No data available for Paralogs for RPSAP52 Gene

Variants for RPSAP52 Gene

Sequence variations from dbSNP and Humsavar for RPSAP52 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10128794 -- 65,765,927(+) ATCTT(C/T)TAAGA intron-variant
rs1042715 -- 65,824,566(+) TGCCG(C/G)CGCTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs10565175 -- 65,792,498(+) GAACT(-/AC)ACATT intron-variant
rs10680159 -- 65,828,373(+) TTGCG(-/GGGC)GGGGG intron-variant, upstream-variant-2KB
rs10748025 -- 65,761,177(+) CTCAT(A/T)ATAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPSAP52 Gene

Variant ID Type Subtype PubMed ID
dgv1521n100 CNV gain 25217958
esv2210361 CNV deletion 18987734
esv2614260 CNV deletion 19546169
esv2676501 CNV deletion 23128226
esv2745997 CNV deletion 23290073
esv275418 CNV gain+loss 21479260
esv3549326 CNV deletion 23714750
esv6997 CNV gain 19470904
nsv1134236 CNV deletion 24896259
nsv507649 OTHER sequence alteration 20534489
nsv975507 CNV duplication 23825009

Relevant External Links for RPSAP52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPSAP52 Gene

Disorders for RPSAP52 Gene

Relevant External Links for RPSAP52

Genetic Association Database (GAD)
RPSAP52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPSAP52

No disorders were found for RPSAP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP52 Gene

Publications for RPSAP52 Gene

  1. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 3 46 64
  2. Genome-wide association reveals genetic effects on human AI^42 and I8 protein levels in cerebrospinal fluids: a case control study. (PMID: 20932310) Han M.R. … Wang L.S. (BMC Neurol 2010) 3 46 64
  3. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  4. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. (PMID: 24509480) . … Morris A.P. (Nat. Genet. 2014) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPSAP52 Gene

Sources for RPSAP52 Gene

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