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Aliases for RPSAP50 Gene

Subcategory (RNA class) for RPSAP50 Gene

lncRNA

Aliases for RPSAP50 Gene

  • Ribosomal Protein SA Pseudogene 50 2 3 5
  • RPSA_24_1172 3

External Ids for RPSAP50 Gene

ORGUL Members for RPSAP50 Gene

Previous GeneCards Identifiers for RPSAP50 Gene

  • GC11P109359
  • GC11P109853

Summaries for RPSAP50 Gene

GeneCards Summary for RPSAP50 Gene

RPSAP50 (Ribosomal Protein SA Pseudogene 50) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPSAP50 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP50 Gene

Genomics for RPSAP50 Gene

Regulatory Elements for RPSAP50 Gene

Enhancers for RPSAP50 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H109984 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.9 2926 1.1 TBL1XR1 SIN3A BMI1 ZNF766 ATF7 RUNX3 IKZF2 CREM CBFB ZBTB11 ZC3H12C ENSG00000270423 RPSAP50
GH11H109970 1.4 Ensembl ENCODE dbSUPER 0.4 -10.2 -10156 2.7 HDGF PKNOX1 TBL1XR1 BMI1 BATF RAD21 ATF7 ETV6 RUNX3 IKZF2 RPSAP50 LOC105369484
GH11H109955 1 ENCODE dbSUPER 0.3 -25.7 -25706 1.1 TBL1XR1 RBBP5 EBF1 RELA POLR2A EED ATF7 ETV6 RUNX3 IKZF2 LOC105369484 RPSAP50
GH11H109980 0.4 ENCODE 0.7 -1.0 -969 1.1 IKZF1 IKZF2 ZC3H12C RPSAP50 LOC105369484
GH11H109960 0.8 Ensembl ENCODE 0.3 -21.3 -21258 1 MAFG HNF4A NFE2 ZBTB40 MAFK NR2F2 LOC105369484 RPSAP50
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP50 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP50 Gene

Genomic Locations for RPSAP50 Gene
chr11:109,982,192-109,983,043
(GRCh38/hg38)
Size:
852 bases
Orientation:
Plus strand
chr11:109,852,918-109,853,769
(GRCh37/hg19)

Genomic View for RPSAP50 Gene

Genes around RPSAP50 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP50 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP50 Gene

Proteins for RPSAP50 Gene

Post-translational modifications for RPSAP50 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP50 Gene

Domains & Families for RPSAP50 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP50 Gene

Function for RPSAP50 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP50 Gene

Localization for RPSAP50 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP50 Gene

Pathways & Interactions for RPSAP50 Gene

SuperPathways for RPSAP50 Gene

No Data Available

Interacting Proteins for RPSAP50 Gene

Gene Ontology (GO) - Biological Process for RPSAP50 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP50 Gene

Drugs & Compounds for RPSAP50 Gene

No Compound Related Data Available

Transcripts for RPSAP50 Gene

mRNA/cDNA for RPSAP50 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP50 Gene

No ASD Table

Relevant External Links for RPSAP50 Gene

GeneLoc Exon Structure for
RPSAP50
ECgene alternative splicing isoforms for
RPSAP50

Expression for RPSAP50 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP50 Gene

Protein differential expression in normal tissues from HIPED for RPSAP50 Gene

This gene is overexpressed in Skin (66.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPSAP50 Gene



Protein tissue co-expression partners for RPSAP50 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP50 Gene:

RPSAP50
genes like me logo Genes that share expression patterns with RPSAP50: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP50 Gene

Orthologs for RPSAP50 Gene

Evolution for RPSAP50 Gene

ENSEMBL:
Gene Tree for RPSAP50 (if available)
TreeFam:
Gene Tree for RPSAP50 (if available)

No data available for Orthologs for RPSAP50 Gene

Paralogs for RPSAP50 Gene

No data available for Paralogs for RPSAP50 Gene

Variants for RPSAP50 Gene

Relevant External Links for RPSAP50 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP50 Gene

Disorders for RPSAP50 Gene

Relevant External Links for RPSAP50

Genetic Association Database (GAD)
RPSAP50

No disorders were found for RPSAP50 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP50 Gene

Publications for RPSAP50 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPSAP50 Gene

Sources for RPSAP50 Gene

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