Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPSAP47 Gene

Aliases for RPSAP47 Gene

  • Ribosomal Protein SA Pseudogene 47 2 3
  • RPSA_19_921 3

External Ids for RPSAP47 Gene

Previous GeneCards Identifiers for RPSAP47 Gene

  • GC08P081637
  • GC08P081472
  • GC08P076960

Summaries for RPSAP47 Gene

Entrez Gene Summary for RPSAP47 Gene

  • Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPSA gene, there is no convincing evidence of transcription. It is thus being annotated as a pseudogene.[provided by RefSeq, Feb 2009]

GeneCards Summary for RPSAP47 Gene

RPSAP47 (Ribosomal Protein SA Pseudogene 47) is a Pseudogene. Diseases associated with RPSAP47 include hiv-1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP47 Gene

Genomics for RPSAP47 Gene

Genomic Location for RPSAP47 Gene

80,558,794 bp from pter
80,559,827 bp from pter
1,034 bases
Plus strand

Genomic View for RPSAP47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPSAP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP47 Gene

No data available for Regulatory Elements for RPSAP47 Gene

Proteins for RPSAP47 Gene

Post-translational modifications for RPSAP47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP47 Gene

Domains for RPSAP47 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP47 Gene

Function for RPSAP47 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPSAP47 Gene

Localization for RPSAP47 Gene

Subcellular locations from

Jensen Localization Image for RPSAP47 Gene COMPARTMENTS Subcellular localization image for RPSAP47 gene
Compartment Confidence
cytosol 3
nucleus 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RPSAP47 Gene

Pathways for RPSAP47 Gene

SuperPathways for RPSAP47 Gene

No Data Available

Interacting Proteins for RPSAP47 Gene

Gene Ontology (GO) - Biological Process for RPSAP47 Gene


No data available for Pathways by source for RPSAP47 Gene

Transcripts for RPSAP47 Gene

mRNA/cDNA for RPSAP47 Gene

(20) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP47 Gene

No ASD Table

Relevant External Links for RPSAP47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RPSAP47 Gene

mRNA expression in normal human tissues for RPSAP47 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP47 Gene

This gene is overexpressed in Liver (6.4).

Protein differential expression in normal tissues for RPSAP47 Gene

This gene is overexpressed in Skin (26.5), Saliva (22.9), and Heart (15.1).

Integrated Proteomics: protein expression from for RPSAP47 Gene

genes like me logo Genes that share expressions with RPSAP47: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RPSAP47 Gene

Orthologs for RPSAP47 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPSAP47 Gene

Organism Taxonomy Gene Similarity Type Details
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7589 35
Species with no ortholog for RPSAP47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPSAP47 Gene

Gene Tree for RPSAP47 (if available)
Gene Tree for RPSAP47 (if available)

Paralogs for RPSAP47 Gene

No data available for Paralogs for RPSAP47 Gene

Variants for RPSAP47 Gene

Relevant External Links for RPSAP47 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RPSAP47 Gene

Disorders for RPSAP47 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for RPSAP47 Gene in MalaCards »

(1) Diseases for RPSAP47 Gene including...

genes like me logo Genes that share disorders with RPSAP47: view

No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for RPSAP47 Gene

Publications for RPSAP47 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women. (PMID: 21507922) Ramsuran V. … Ndung'u T. (Clin. Infect. Dis. 2011) 3
  3. Novel associations for hypothyroidism include known autoimmune risk loci. (PMID: 22493691) Eriksson N. … Do C.B. (PLoS ONE 2012) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for RPSAP47 Gene

Sources for RPSAP47 Gene

Back to Top