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Aliases for RPSAP47 Gene

Aliases for RPSAP47 Gene

  • Ribosomal Protein SA Pseudogene 47 2 3
  • RPSA_19_921 3

External Ids for RPSAP47 Gene

Summaries for RPSAP47 Gene

Entrez Gene Summary for RPSAP47 Gene

  • Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPSA gene, there is no convincing evidence of transcription. It is thus being annotated as a pseudogene.[provided by RefSeq, Feb 2009]

GeneCards Summary for RPSAP47 Gene

RPSAP47 (Ribosomal Protein SA Pseudogene 47) is a Pseudogene. Diseases associated with RPSAP47 include hiv-1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP47 Gene

Genomics for RPSAP47 Gene

Genomic Location for RPSAP47 Gene

Start:
80,558,794 bp from pter
End:
80,559,827 bp from pter
Size:
1,034 bases
Orientation:
Plus strand

Genomic View for RPSAP47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPSAP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP47 Gene

No data available for Regulatory Elements for RPSAP47 Gene

Proteins for RPSAP47 Gene

Post-translational modifications for RPSAP47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP47 Gene

Domains for RPSAP47 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RPSAP47 Gene

Function for RPSAP47 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPSAP47 Gene

Localization for RPSAP47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPSAP47 Gene COMPARTMENTS Subcellular localization image for RPSAP47 gene
Compartment Confidence
cytosol 3
nucleus 2
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for RPSAP47 Gene

Pathways for RPSAP47 Gene

SuperPathways for RPSAP47 Gene

No Data Available

Interacting Proteins for RPSAP47 Gene

Gene Ontology (GO) - Biological Process for RPSAP47 Gene

None

No data available for Pathways by source for RPSAP47 Gene

Transcripts for RPSAP47 Gene

mRNA/cDNA for RPSAP47 Gene

(1) REFSEQ mRNAs :
(20) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP47 Gene

No ASD Table

Relevant External Links for RPSAP47 Gene

GeneLoc Exon Structure for
RPSAP47
ECgene alternative splicing isoforms for
RPSAP47

Expression for RPSAP47 Gene

mRNA expression in normal human tissues for RPSAP47 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP47 Gene

This gene is overexpressed in Liver (6.4).

Integrated Proteomics: protein expression from for RPSAP47 Gene

genes like me logo Genes that share expressions with RPSAP47: view

Orthologs for RPSAP47 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPSAP47 Gene

Organism Taxonomy Gene Similarity Type Details
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7589 36
Species with no ortholog for RPSAP47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPSAP47 Gene

ENSEMBL:
Gene Tree for RPSAP47 (if available)
TreeFam:
Gene Tree for RPSAP47 (if available)

Paralogs for RPSAP47 Gene

No data available for Paralogs for RPSAP47 Gene

Variants for RPSAP47 Gene

Relevant External Links for RPSAP47 Gene

HapMap Linkage Disequilibrium report
RPSAP47

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RPSAP47 Gene

Disorders for RPSAP47 Gene

(1) MalaCards Diseases for RPSAP47 Gene

Search for RPSAP47 Gene in MalaCards »
genes like me logo Genes that share disorders with RPSAP47: view

No data available for UniProtKB/Swiss-Prot for RPSAP47 Gene

Publications for RPSAP47 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women. (PMID: 21507922) Ramsuran V. … Ndung'u T. (Clin. Infect. Dis. 2011) 3
  3. Novel associations for hypothyroidism include known autoimmune risk loci. (PMID: 22493691) Eriksson N. … Do C.B. (PLoS ONE 2012) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for RPSAP47 Gene

Sources for RPSAP47 Gene

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