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Aliases for RPSAP47 Gene

Aliases for RPSAP47 Gene

  • Ribosomal Protein SA Pseudogene 47 2 3 5
  • RPSA_19_921 3

External Ids for RPSAP47 Gene

Previous GeneCards Identifiers for RPSAP47 Gene

  • GC08P081637
  • GC08P081472
  • GC08P076960

Summaries for RPSAP47 Gene

Entrez Gene Summary for RPSAP47 Gene

  • Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPSA gene, there is no convincing evidence of transcription. It is thus being annotated as a pseudogene.[provided by RefSeq, Feb 2009]

GeneCards Summary for RPSAP47 Gene

RPSAP47 (Ribosomal Protein SA Pseudogene 47) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP47 Gene

Genomics for RPSAP47 Gene

Regulatory Elements for RPSAP47 Gene

Promoters for RPSAP47 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RPSAP47 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP47 Gene

Chromosome:
8
Start:
80,558,794 bp from pter
End:
80,559,827 bp from pter
Size:
1,034 bases
Orientation:
Plus strand

Genomic View for RPSAP47 Gene

Genes around RPSAP47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP47 Gene

Proteins for RPSAP47 Gene

Post-translational modifications for RPSAP47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP47 Gene

Domains & Families for RPSAP47 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP47 Gene

Function for RPSAP47 Gene

Phenotypes for RPSAP47 Gene

GenomeRNAi human phenotypes for RPSAP47:
genes like me logo Genes that share phenotypes with RPSAP47: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP47 Gene

Localization for RPSAP47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP47 Gene

Pathways & Interactions for RPSAP47 Gene

SuperPathways for RPSAP47 Gene

No Data Available

Interacting Proteins for RPSAP47 Gene

Gene Ontology (GO) - Biological Process for RPSAP47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP47 Gene

Drugs & Compounds for RPSAP47 Gene

No Compound Related Data Available

Transcripts for RPSAP47 Gene

mRNA/cDNA for RPSAP47 Gene

(1) REFSEQ mRNAs :
(20) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP47 Gene

No ASD Table

Relevant External Links for RPSAP47 Gene

GeneLoc Exon Structure for
RPSAP47
ECgene alternative splicing isoforms for
RPSAP47

Expression for RPSAP47 Gene

mRNA expression in normal human tissues for RPSAP47 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP47 Gene

This gene is overexpressed in Liver (x6.4).

Protein differential expression in normal tissues from HIPED for RPSAP47 Gene

This gene is overexpressed in Skin (26.5), Saliva (22.9), and Heart (15.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from for RPSAP47 Gene



genes like me logo Genes that share expression patterns with RPSAP47: view

Protein tissue co-expression partners for RPSAP47 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RPSAP47 Gene

Orthologs for RPSAP47 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPSAP47 Gene

Organism Taxonomy Gene Similarity Type Details
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7589 35
Species with no ortholog for RPSAP47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPSAP47 Gene

ENSEMBL:
Gene Tree for RPSAP47 (if available)
TreeFam:
Gene Tree for RPSAP47 (if available)

Paralogs for RPSAP47 Gene

No data available for Paralogs for RPSAP47 Gene

Variants for RPSAP47 Gene

Relevant External Links for RPSAP47 Gene

HapMap Linkage Disequilibrium report
RPSAP47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP47 Gene

Disorders for RPSAP47 Gene

No disorders were found for RPSAP47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP47 Gene

Publications for RPSAP47 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 67
  2. Novel associations for hypothyroidism include known autoimmune risk loci. (PMID: 22493691) Eriksson N. … Do C.B. (PLoS ONE 2012) 3
  3. Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women. (PMID: 21507922) Ramsuran V. … Ndung'u T. (Clin. Infect. Dis. 2011) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for RPSAP47 Gene

Sources for RPSAP47 Gene

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