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Aliases for RPSAP43 Gene

Aliases for RPSAP43 Gene

  • Ribosomal Protein SA Pseudogene 43 2 3 5
  • RPSA_12_742 3

External Ids for RPSAP43 Gene

Previous GeneCards Identifiers for RPSAP43 Gene

  • GC06M114513
  • GC06M114406
  • GC06M114407
  • GC06M114408
  • GC06M114409
  • GC06M114410
  • GC06M114411
  • GC06M114412
  • GC06M114413
  • GC06M114414

Summaries for RPSAP43 Gene

GeneCards Summary for RPSAP43 Gene

RPSAP43 (Ribosomal Protein SA Pseudogene 43) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP43 Gene

Genomics for RPSAP43 Gene

Regulatory Elements for RPSAP43 Gene

Enhancers for RPSAP43 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G114144 0.9 ENCODE 0.2 -60.7 -60738 1.8 ELF3 FOXA2 ARID4B RAD21 THRB ZNF48 ZSCAN9 RARA GATA4 SCRT2 FLJ34503 GC06P114168 RPSAP43
GH06G114068 0.4 ENCODE 0.4 +16.0 15953 1.1 ATF2 NUDT19P3 HDAC2 RPSAP43 GC06P114038
GH06G114070 0.3 FANTOM5 0.4 +14.4 14433 0.2 HS3ST5 RPSAP43 GC06P114038
GH06G114121 0.4 ENCODE 0.3 -37.6 -37583 1.1 SMARCA4 HLF RPSAP43 GC06P114168
GH06G114164 0.6 ENCODE 0.2 -80.4 -80382 1.7 SOX13 GATAD2A HNF1A FOXA2 NCOR1 RCOR2 HNF4G HNF4A MIXL1 GC06P114168 RPSAP43
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP43 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP43 Gene

Chromosome:
6
Start:
114,084,098 bp from pter
End:
114,084,793 bp from pter
Size:
696 bases
Orientation:
Minus strand

Genomic View for RPSAP43 Gene

Genes around RPSAP43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP43 Gene

Proteins for RPSAP43 Gene

Post-translational modifications for RPSAP43 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP43 Gene

Domains & Families for RPSAP43 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP43 Gene

Function for RPSAP43 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP43 Gene

Localization for RPSAP43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP43 Gene

Pathways & Interactions for RPSAP43 Gene

SuperPathways for RPSAP43 Gene

No Data Available

Interacting Proteins for RPSAP43 Gene

Gene Ontology (GO) - Biological Process for RPSAP43 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP43 Gene

Drugs & Compounds for RPSAP43 Gene

No Compound Related Data Available

Transcripts for RPSAP43 Gene

mRNA/cDNA for RPSAP43 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP43 Gene

No ASD Table

Relevant External Links for RPSAP43 Gene

GeneLoc Exon Structure for
RPSAP43
ECgene alternative splicing isoforms for
RPSAP43

Expression for RPSAP43 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP43 Gene

mRNA expression in normal human tissues for RPSAP43 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP43 Gene:

RPSAP43
genes like me logo Genes that share expression patterns with RPSAP43: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP43 Gene

Orthologs for RPSAP43 Gene

Evolution for RPSAP43 Gene

ENSEMBL:
Gene Tree for RPSAP43 (if available)
TreeFam:
Gene Tree for RPSAP43 (if available)

No data available for Orthologs for RPSAP43 Gene

Paralogs for RPSAP43 Gene

No data available for Paralogs for RPSAP43 Gene

Variants for RPSAP43 Gene

Relevant External Links for RPSAP43 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP43 Gene

Disorders for RPSAP43 Gene

Relevant External Links for RPSAP43

Genetic Association Database (GAD)
RPSAP43

No disorders were found for RPSAP43 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP43 Gene

Publications for RPSAP43 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association identifies ATOH7 as a major gene determining human optic disc size. (PMID: 20395239) Macgregor S. … Mackey D.A. (Hum. Mol. Genet. 2010) 46 64
  3. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 46 64
  4. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64
  5. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S. … Wolf P.A. (BMC Med. Genet. 2007) 46 64

Products for RPSAP43 Gene

Sources for RPSAP43 Gene

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