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Aliases for RPSAP42 Gene

Subcategory (RNA class) for RPSAP42 Gene

lncRNA

Aliases for RPSAP42 Gene

  • Ribosomal Protein SA Pseudogene 42 2 3 5
  • RPSA_18_761 3

External Ids for RPSAP42 Gene

ORGUL Members for RPSAP42 Gene

Previous GeneCards Identifiers for RPSAP42 Gene

  • GC06U901645
  • GC06P138316

Summaries for RPSAP42 Gene

GeneCards Summary for RPSAP42 Gene

RPSAP42 (Ribosomal Protein SA Pseudogene 42) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP42 Gene

Genomics for RPSAP42 Gene

Regulatory Elements for RPSAP42 Gene

Enhancers for RPSAP42 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G138006 1.3 Ensembl ENCODE dbSUPER 0.4 +12.0 11990 1.5 CTCF FOXA2 SAP130 BACH1 MAX FEZF1 EBF1 RAD21 ZNF316 ZBTB48 PERP RPSAP42 LOC105378021
GH06G137974 1.3 Ensembl ENCODE dbSUPER 0.4 -19.5 -19489 2.6 FOXA2 THRB RAD21 FOS RELB IKZF2 MIXL1 ZNF654 NFYC CEBPB RPSAP42 LOC105378020
GH06G137967 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -26.8 -26782 1.8 HDAC1 PKNOX1 ATF1 TBL1XR1 ARNT RAD21 TCF12 MXD4 CEBPB JUNB TNFAIP3 LOC105378020 RPSAP42
GH06G138029 1.5 FANTOM5 ENCODE dbSUPER 0.3 +38.2 38206 7.0 PKNOX1 NFIB KLF17 FEZF1 RAD21 SCRT2 FOS ZNF391 SP5 ZEB2 PERP LOC105378021 RPSAP42
GH06G137977 1.1 ENCODE dbSUPER 0.4 -16.7 -16688 1.3 HDAC1 CBX3 ATF1 KLF17 TCF12 GATA2 FOS RELB ETV6 CREM RPSAP42 LOC105378020
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP42 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP42 Gene

Chromosome:
6
Start:
137,995,270 bp from pter
End:
137,996,147 bp from pter
Size:
878 bases
Orientation:
Plus strand

Genomic View for RPSAP42 Gene

Genes around RPSAP42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP42 Gene

Proteins for RPSAP42 Gene

Post-translational modifications for RPSAP42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP42 Gene

Domains & Families for RPSAP42 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP42 Gene

Function for RPSAP42 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP42 Gene

Localization for RPSAP42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP42 Gene

Pathways & Interactions for RPSAP42 Gene

SuperPathways for RPSAP42 Gene

No Data Available

Interacting Proteins for RPSAP42 Gene

Gene Ontology (GO) - Biological Process for RPSAP42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP42 Gene

Transcripts for RPSAP42 Gene

mRNA/cDNA for RPSAP42 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP42 Gene

No ASD Table

Relevant External Links for RPSAP42 Gene

GeneLoc Exon Structure for
RPSAP42
ECgene alternative splicing isoforms for
RPSAP42

Expression for RPSAP42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP42 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP42 Gene:

RPSAP42
genes like me logo Genes that share expression patterns with RPSAP42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP42 Gene

Orthologs for RPSAP42 Gene

Evolution for RPSAP42 Gene

ENSEMBL:
Gene Tree for RPSAP42 (if available)
TreeFam:
Gene Tree for RPSAP42 (if available)

No data available for Orthologs for RPSAP42 Gene

Paralogs for RPSAP42 Gene

No data available for Paralogs for RPSAP42 Gene

Variants for RPSAP42 Gene

Relevant External Links for RPSAP42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP42 Gene

Disorders for RPSAP42 Gene

No disorders were found for RPSAP42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP42 Gene

Publications for RPSAP42 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPSAP42 Gene

Sources for RPSAP42 Gene

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