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Aliases for RPSAP39 Gene

Aliases for RPSAP39 Gene

  • Ribosomal Protein SA Pseudogene 39 2 3 5
  • RPSA_12_495 3

External Ids for RPSAP39 Gene

Previous GeneCards Identifiers for RPSAP39 Gene

  • GC04P081302
  • GC04P081083

Summaries for RPSAP39 Gene

GeneCards Summary for RPSAP39 Gene

RPSAP39 (Ribosomal Protein SA Pseudogene 39) is a Pseudogene.

Additional gene information for RPSAP39 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP39 Gene

Genomics for RPSAP39 Gene

GeneHancer (GH) Regulatory Elements for RPSAP39 Gene

Promoters and enhancers for RPSAP39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I080162 Enhancer 0.4 ENCODE 550.8 +1.0 1041 0.1 NRF1 CHAMP1 RPSAP39 PRDM8 LOC105377303 ANTXR2
GH04I080141 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.3 -18312 3.1 PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 ARID2 ATF7 ANTXR2 PRDM8 RPSAP39
GH04I080123 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -34.9 -34856 4.6 HDGF ATF1 PKNOX1 ARNT NCOA2 ZNF280A TCF12 ZNF766 ARID2 FOS ANTXR2 PRDM8 LOC105377303 RPSAP39
GH04I080171 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.7 11743 3.2 FOSL1 GATA3 HMBOX1 TRIM24 ETV6 IKZF2 RUNX3 ANTXR2 PRDM8 FGF5 RPSAP39 GC04M080167
GH04I080137 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.0 -21953 3.2 MEIS2 LEF1 PKNOX1 ARNT NFRKB TAL1 MAX BATF ZNF507 TCF12 PRDM8 ANTXR2 RPSAP39
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP39 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP39 Gene

Genomic Locations for RPSAP39 Gene
chr4:80,161,053-80,162,081
(GRCh38/hg38)
Size:
1,029 bases
Orientation:
Plus strand
chr4:81,082,207-81,083,235
(GRCh37/hg19)

Genomic View for RPSAP39 Gene

Genes around RPSAP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP39 Gene

Proteins for RPSAP39 Gene

Post-translational modifications for RPSAP39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP39 Gene

Domains & Families for RPSAP39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP39 Gene

Function for RPSAP39 Gene

Phenotypes From GWAS Catalog for RPSAP39 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP39 Gene

Localization for RPSAP39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP39 Gene

Pathways & Interactions for RPSAP39 Gene

SuperPathways for RPSAP39 Gene

No Data Available

Interacting Proteins for RPSAP39 Gene

Gene Ontology (GO) - Biological Process for RPSAP39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP39 Gene

Drugs & Compounds for RPSAP39 Gene

No Compound Related Data Available

Transcripts for RPSAP39 Gene

mRNA/cDNA for RPSAP39 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP39 Gene

No ASD Table

Relevant External Links for RPSAP39 Gene

GeneLoc Exon Structure for
RPSAP39
ECgene alternative splicing isoforms for
RPSAP39

Expression for RPSAP39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP39 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP39 Gene:

RPSAP39
genes like me logo Genes that share expression patterns with RPSAP39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP39 Gene

Orthologs for RPSAP39 Gene

Evolution for RPSAP39 Gene

ENSEMBL:
Gene Tree for RPSAP39 (if available)
TreeFam:
Gene Tree for RPSAP39 (if available)

No data available for Orthologs for RPSAP39 Gene

Paralogs for RPSAP39 Gene

No data available for Paralogs for RPSAP39 Gene

Variants for RPSAP39 Gene

Additional Variant Information for RPSAP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP39 Gene

Disorders for RPSAP39 Gene

No disorders were found for RPSAP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP39 Gene

Publications for RPSAP39 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPSAP39 Gene

Sources for RPSAP39 Gene

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