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Aliases for RPSAP39 Gene

Aliases for RPSAP39 Gene

  • Ribosomal Protein SA Pseudogene 39 2 3 5
  • RPSA_12_495 3

External Ids for RPSAP39 Gene

Previous GeneCards Identifiers for RPSAP39 Gene

  • GC04P081302
  • GC04P081083

Summaries for RPSAP39 Gene

GeneCards Summary for RPSAP39 Gene

RPSAP39 (Ribosomal Protein SA Pseudogene 39) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP39 Gene

Genomics for RPSAP39 Gene

Regulatory Elements for RPSAP39 Gene

Enhancers for RPSAP39 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F080162 0.2 ENCODE 0.8 +1.0 1042 0.1 CHAMP1 PRDM8 LOC105377303 ANTXR2 RPSAP39
GH04F080154 0.6 ENCODE 0.4 -6.3 -6338 1.4 ZNF316 SMARCA4 EMSY ZBTB40 MAFK TCF7L2 PRDM8 LOC105377303 ANTXR2 RPSAP39
GH04F080171 1.2 FANTOM5 Ensembl ENCODE 0.4 +11.7 11744 3.2 CBX3 HMBOX1 ETV6 TRIM24 MAFK ANTXR2 PRDM8 FGF5 RPSAP39
GH04F080137 1.2 FANTOM5 Ensembl ENCODE 0.3 -21.9 -21912 3.3 SMARCE1 PKNOX1 RFX1 TAL1 MAX ZNF175 JUNB NCOA1 DPF2 ARID1B PRDM8 ANTXR2 RPSAP39
GH04F080181 0.9 Ensembl ENCODE 0.3 +20.4 20372 0.5 IRF1 PRDM1 PRDM8 RPSAP39
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPSAP39 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP39 Gene

Chromosome:
4
Start:
80,161,053 bp from pter
End:
80,162,081 bp from pter
Size:
1,029 bases
Orientation:
Plus strand

Genomic View for RPSAP39 Gene

Genes around RPSAP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP39 Gene

Proteins for RPSAP39 Gene

Post-translational modifications for RPSAP39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP39 Gene

Domains & Families for RPSAP39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP39 Gene

Function for RPSAP39 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP39 Gene

Localization for RPSAP39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP39 Gene

Pathways & Interactions for RPSAP39 Gene

SuperPathways for RPSAP39 Gene

No Data Available

Interacting Proteins for RPSAP39 Gene

Gene Ontology (GO) - Biological Process for RPSAP39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP39 Gene

Transcripts for RPSAP39 Gene

mRNA/cDNA for RPSAP39 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP39 Gene

No ASD Table

Relevant External Links for RPSAP39 Gene

GeneLoc Exon Structure for
RPSAP39
ECgene alternative splicing isoforms for
RPSAP39

Expression for RPSAP39 Gene

mRNA expression in normal human tissues for RPSAP39 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP39 Gene:

RPSAP39
genes like me logo Genes that share expression patterns with RPSAP39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPSAP39 Gene

Orthologs for RPSAP39 Gene

Evolution for RPSAP39 Gene

ENSEMBL:
Gene Tree for RPSAP39 (if available)
TreeFam:
Gene Tree for RPSAP39 (if available)

No data available for Orthologs for RPSAP39 Gene

Paralogs for RPSAP39 Gene

No data available for Paralogs for RPSAP39 Gene

Variants for RPSAP39 Gene

Relevant External Links for RPSAP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP39 Gene

Disorders for RPSAP39 Gene

No disorders were found for RPSAP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP39 Gene

Publications for RPSAP39 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPSAP39 Gene

Sources for RPSAP39 Gene

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