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Aliases for RPSAP22 Gene

Subcategory (RNA class) for RPSAP22 Gene

lncRNA

Aliases for RPSAP22 Gene

  • Ribosomal Protein SA Pseudogene 22 2 3 5
  • RPSA_5_248 3

External Ids for RPSAP22 Gene

ORGUL Members for RPSAP22 Gene

Previous GeneCards Identifiers for RPSAP22 Gene

  • GC02U901638
  • GC02M085719
  • GC02M085720
  • GC02M085724

Summaries for RPSAP22 Gene

GeneCards Summary for RPSAP22 Gene

RPSAP22 (Ribosomal Protein SA Pseudogene 22) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP22 Gene

Genomics for RPSAP22 Gene

Regulatory Elements for RPSAP22 Gene

Enhancers for RPSAP22 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F085497 1.7 FANTOM5 Ensembl ENCODE 0.4 -11.0 -10995 10.5 HDGF ARNT MLX ARID4B SIN3A DMAP1 YY1 ZNF143 FOS KLF13 USP39 TMEM150A TCF7L1 MAT2A SNORD94 LOC100996506 RN7SL251P RNU7-64P CAPG C2orf68
GH02F085496 0.7 ENCODE 0.8 -4.8 -4782 1.1 BCOR SMARCA5 HDGF TAL1 ZNF407 CEBPB YY1 ARID1B NCOR1 SCRT2 USP39 RN7SL251P RNU7-64P CAPG SH2D6 ELMOD3 RETSAT MAT2A VAMP5 RPSAP22
GH02F085467 1.3 Ensembl ENCODE 0.3 +21.3 21343 5.8 PKNOX1 ATF1 CREB3L1 ARID4B FEZF1 DMAP1 ZNF48 YY1 SLC30A9 GATA2 RN7SL251P RNU7-64P MAT2A CAPG SH2D6 ELMOD3 RETSAT VAMP8 GGCX ENSG00000199936
GH02F085523 1.2 Ensembl ENCODE 0.3 -32.7 -32737 3.0 HDAC1 PKNOX1 CBX3 ARID4B NFXL1 RAD21 RARA GATA2 ZNF143 CREM GGCX VAMP8 RN7SL251P RNU7-64P CAPG SH2D6 RETSAT ELMOD3 GC02M085532 RPSAP22
GH02F085516 1.1 Ensembl ENCODE 0.3 -25.3 -25314 1.8 ELF3 ZFP64 RAD21 RARA KAT2B ZNF23 FOS EGR2 THAP11 GLIS1 GGCX RN7SL251P RNU7-64P MAT2A ELMOD3 RETSAT GC02M085532 RPSAP22
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP22 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP22 Gene

Chromosome:
2
Start:
85,490,925 bp from pter
End:
85,491,780 bp from pter
Size:
856 bases
Orientation:
Minus strand

Genomic View for RPSAP22 Gene

Genes around RPSAP22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP22 Gene

Proteins for RPSAP22 Gene

Post-translational modifications for RPSAP22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP22 Gene

Domains & Families for RPSAP22 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP22 Gene

Function for RPSAP22 Gene

Phenotypes for RPSAP22 Gene

GenomeRNAi human phenotypes for RPSAP22:
genes like me logo Genes that share phenotypes with RPSAP22: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP22 Gene

Localization for RPSAP22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP22 Gene

Pathways & Interactions for RPSAP22 Gene

SuperPathways for RPSAP22 Gene

No Data Available

Interacting Proteins for RPSAP22 Gene

Gene Ontology (GO) - Biological Process for RPSAP22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP22 Gene

Transcripts for RPSAP22 Gene

mRNA/cDNA for RPSAP22 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP22 Gene

No ASD Table

Relevant External Links for RPSAP22 Gene

GeneLoc Exon Structure for
RPSAP22
ECgene alternative splicing isoforms for
RPSAP22

Expression for RPSAP22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP22 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP22 Gene

This gene is overexpressed in Whole Blood (x19.0), Heart - Left Ventricle (x5.7), and Spleen (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of RPSAP22 Gene:

RPSAP22
genes like me logo Genes that share expression patterns with RPSAP22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPSAP22 Gene

Orthologs for RPSAP22 Gene

Evolution for RPSAP22 Gene

ENSEMBL:
Gene Tree for RPSAP22 (if available)
TreeFam:
Gene Tree for RPSAP22 (if available)

No data available for Orthologs for RPSAP22 Gene

Paralogs for RPSAP22 Gene

No data available for Paralogs for RPSAP22 Gene

Variants for RPSAP22 Gene

Relevant External Links for RPSAP22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP22 Gene

Disorders for RPSAP22 Gene

No disorders were found for RPSAP22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP22 Gene

Publications for RPSAP22 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPSAP22 Gene

Sources for RPSAP22 Gene

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