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Aliases for RPSAP21 Gene

Aliases for RPSAP21 Gene

  • Ribosomal Protein SA Pseudogene 21 2 3 5
  • RPSA_2_180 3

External Ids for RPSAP21 Gene

Previous GeneCards Identifiers for RPSAP21 Gene

  • GC01U902326
  • GC01P236983

Summaries for RPSAP21 Gene

GeneCards Summary for RPSAP21 Gene

RPSAP21 (Ribosomal Protein SA Pseudogene 21) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP21 Gene

Genomics for RPSAP21 Gene

Regulatory Elements for RPSAP21 Gene

Enhancers for RPSAP21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F236794 0.6 ENCODE 16.5 -23.7 -23681 2.7 PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5 HEATR1 ENSG00000273058 MTR ENSG00000230325 RPSAP21 LOC100130485 RPL35P1 LYST
GH01F236880 0.5 ENCODE 16.3 +61.0 61012 0.8 SUZ12 ZNF76 ZNF223 ZNF2 ZNF324 ZNF335 ZNF366 ZBTB48 PATZ1 ZBTB20 RPSAP21 LOC100130485 MTR GC01P236900 GC01P236848
GH01F235929 1.3 FANTOM5 Ensembl ENCODE 16.2 -879.7 -879656 21.4 HDGF PKNOX1 ARNT CREB3L1 ZFP64 SIN3A FEZF1 DMAP1 YBX1 ZNF2 ENSG00000273058 ENSG00000230325 RPS21P1 HEATR1 MTR LYST TBCE LDHAP2 LOC100130485 RPSAP21
GH01F235916 1.3 FANTOM5 Ensembl ENCODE 16.2 -899.1 -899081 8.7 HDGF PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 ZNF416 ZNF548 FOS ZNF263 ENSG00000273058 ENSG00000230325 RPS21P1 HEATR1 MTR LYST LOC100130485 RPSAP21 RNU5E-2P TBCE
GH01F235907 1.2 Ensembl ENCODE 16.2 -908.5 -908468 7.0 PKNOX1 SIN3A FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF548 FOS ZNF202 ENSG00000273058 HEATR1 ENSG00000230325 RPS21P1 MTR LDHAP2 LOC100130485 RPSAP21 GNG4 LYST
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPSAP21 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP21 Gene

Chromosome:
1
Start:
236,819,556 bp from pter
End:
236,820,590 bp from pter
Size:
1,035 bases
Orientation:
Plus strand

Genomic View for RPSAP21 Gene

Genes around RPSAP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP21 Gene

Proteins for RPSAP21 Gene

Post-translational modifications for RPSAP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP21 Gene

Domains & Families for RPSAP21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP21 Gene

Function for RPSAP21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP21 Gene

Localization for RPSAP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP21 Gene

Pathways & Interactions for RPSAP21 Gene

SuperPathways for RPSAP21 Gene

No Data Available

Interacting Proteins for RPSAP21 Gene

Gene Ontology (GO) - Biological Process for RPSAP21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP21 Gene

Transcripts for RPSAP21 Gene

mRNA/cDNA for RPSAP21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP21 Gene

No ASD Table

Relevant External Links for RPSAP21 Gene

GeneLoc Exon Structure for
RPSAP21
ECgene alternative splicing isoforms for
RPSAP21

Expression for RPSAP21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP21 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP21 Gene:

RPSAP21
genes like me logo Genes that share expression patterns with RPSAP21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPSAP21 Gene

Orthologs for RPSAP21 Gene

Evolution for RPSAP21 Gene

ENSEMBL:
Gene Tree for RPSAP21 (if available)
TreeFam:
Gene Tree for RPSAP21 (if available)

No data available for Orthologs for RPSAP21 Gene

Paralogs for RPSAP21 Gene

No data available for Paralogs for RPSAP21 Gene

Variants for RPSAP21 Gene

Relevant External Links for RPSAP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP21 Gene

Disorders for RPSAP21 Gene

No disorders were found for RPSAP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP21 Gene

Publications for RPSAP21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPSAP21 Gene

Sources for RPSAP21 Gene

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