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Aliases for RPSAP20 Gene

Aliases for RPSAP20 Gene

  • Ribosomal Protein SA Pseudogene 20 2 3 5
  • RPSA_1_53 3

External Ids for RPSAP20 Gene

Previous GeneCards Identifiers for RPSAP20 Gene

  • GC01M056445
  • GC01M056674

Summaries for RPSAP20 Gene

GeneCards Summary for RPSAP20 Gene

RPSAP20 (Ribosomal Protein SA Pseudogene 20) is a Pseudogene.

Additional gene information for RPSAP20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP20 Gene

Genomics for RPSAP20 Gene

GeneHancer (GH) Regulatory Elements for RPSAP20 Gene

Promoters and enhancers for RPSAP20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I055210 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.7 +994.0 993955 8.1 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 USP24 LOC100507634 RPSAP20 MIR4422HG GC01P055101
GH01I056190 Enhancer 1.1 ENCODE dbSUPER 0.4 +17.3 17256 2 FOXA2 MLX ARID4B DMAP1 ETS1 ATF7 SP5 MXD4 MIER2 PPARG ENSG00000260971 RPSAP20 ENSG00000235612 ENSG00000284686
GH01I056191 Enhancer 1.1 ENCODE dbSUPER 0.4 +18.5 18465 0.2 FOXA2 MLX ARID4B DMAP1 ETS1 ZNF143 ATF7 SP5 MXD4 MIER2 RPSAP20 ENSG00000235612 ENSG00000260971 ENSG00000284686
GH01I056199 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +7.9 7855 2.7 STAT1 LEF1 PKNOX1 GLIS1 RCOR1 FOS PRDM4 TCF7L2 ENSG00000260971 RPSAP20 ENSG00000235612 ENSG00000284686
GH01I056189 Enhancer 0.7 ENCODE 0.4 +19.4 19365 0.2 SOX13 FOXA2 ZFP64 ZNF644 ETS1 TEAD3 NR2F6 CREM GATAD2A SOX5 RPSAP20 ENSG00000235612 ENSG00000260971 ENSG00000284686
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP20 Gene

Genomic Locations for RPSAP20 Gene
chr1:56,207,472-56,208,529
(GRCh38/hg38)
Size:
1,058 bases
Orientation:
Minus strand
chr1:56,673,139-56,674,201
(GRCh37/hg19)

Genomic View for RPSAP20 Gene

Genes around RPSAP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP20 Gene

Proteins for RPSAP20 Gene

Post-translational modifications for RPSAP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP20 Gene

Domains & Families for RPSAP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP20 Gene

Function for RPSAP20 Gene

Phenotypes From GWAS Catalog for RPSAP20 Gene

genes like me logo Genes that share phenotypes with RPSAP20: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP20 Gene

Localization for RPSAP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP20 Gene

Pathways & Interactions for RPSAP20 Gene

SuperPathways for RPSAP20 Gene

No Data Available

Interacting Proteins for RPSAP20 Gene

Gene Ontology (GO) - Biological Process for RPSAP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP20 Gene

Drugs & Compounds for RPSAP20 Gene

No Compound Related Data Available

Transcripts for RPSAP20 Gene

mRNA/cDNA for RPSAP20 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP20 Gene

No ASD Table

Relevant External Links for RPSAP20 Gene

GeneLoc Exon Structure for
RPSAP20
ECgene alternative splicing isoforms for
RPSAP20

Expression for RPSAP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP20 Gene:

RPSAP20
genes like me logo Genes that share expression patterns with RPSAP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP20 Gene

Orthologs for RPSAP20 Gene

Evolution for RPSAP20 Gene

ENSEMBL:
Gene Tree for RPSAP20 (if available)
TreeFam:
Gene Tree for RPSAP20 (if available)

No data available for Orthologs for RPSAP20 Gene

Paralogs for RPSAP20 Gene

No data available for Paralogs for RPSAP20 Gene

Variants for RPSAP20 Gene

Additional Variant Information for RPSAP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP20 Gene

Disorders for RPSAP20 Gene

Additional Disease Information for RPSAP20

Genetic Association Database
(GAD)

No disorders were found for RPSAP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP20 Gene

Publications for RPSAP20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association reveals genetic effects on human Aβ42 and τ protein levels in cerebrospinal fluids: a case control study. (PMID: 20932310) Han MR … Alzheimer's Disease Neuroimaging Initiative (BMC neurology 2010) 44 58

Products for RPSAP20 Gene

Sources for RPSAP20 Gene

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