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RPSAP18 Gene(Pseudogene)

Ribosomal Protein SA Pseudogene 18

GCID:
GC01M160238
GIFtS:
13
Genes Participants
UDN Logo

Aliases for RPSAP18 Gene

Aliases for RPSAP18 Gene

  • Ribosomal Protein SA Pseudogene 18 2 3 5
  • RPSA_4_107 3

External Ids for RPSAP18 Gene

Previous GeneCards Identifiers for RPSAP18 Gene

  • GC01M158504
  • GC01M160237

Summaries for RPSAP18 Gene

GeneCards Summary for RPSAP18 Gene

RPSAP18 (Ribosomal Protein SA Pseudogene 18) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP18 Gene

Genomics for RPSAP18 Gene

Products:

  1. Regulatory Element

Regulatory Elements for RPSAP18 Gene

Enhancers for RPSAP18 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G159908 2.1 FANTOM5 Ensembl ENCODE dbSUPER 36.6 +349.8 349820 18.5 FEZF1 YBX1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D ZNF610 GLIS1 SNHG28 ENSG00000272668 RPSAP18 ENSG00000228606 VSIG8 PIGM SLAMF8 CADM3 TAGLN2 FCRL6
GH01G161096 1.2 ENCODE 60.2 -830.4 -830376 2.9 AGO1 YBX1 FEZF1 YY1 ZNF416 ZNF143 ZNF548 SP3 MCM3 TBX21 DUSP12 RPSAP18 ENSG00000228606 KLHDC9 ATF6 FCER1G NDUFS2 B4GALT3 NIT1 NECTIN4
GH01G159881 1.8 FANTOM5 Ensembl ENCODE dbSUPER 36.6 +385.2 385168 1.7 PKNOX1 SIN3A FOS DEK ZNF491 ZNF518A ZNF592 MAFF SMARCA4 GLIS1 ENSG00000272668 RPSAP18 SNHG28 ENSG00000228606 SLAMF8 PIGM CADM3 VSIG8 SLAMF9 TAGLN2
GH01G161127 1.1 Ensembl 46 -860.5 -860498 0.8 HDGF ARNT SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF302 ZNF416 ZNF548 DUSP12 RPSAP18 ENSG00000228606 ATF6 KLHDC9 B4GALT3 PIR61783 DEDD
GH01G161011 1.9 FANTOM5 ENCODE dbSUPER 16.2 -749.9 -749911 11.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TSTD1 ARHGAP30 KLHDC9 FCGR2A USF1 RPSAP18 DEDD LOC105371471 NECTIN4 F11R
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP18 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP18 Gene

Chromosome:
1
Start:
160,266,269 bp from pter
End:
160,267,303 bp from pter
Size:
1,035 bases
Orientation:
Minus strand

Genomic View for RPSAP18 Gene

Genes around RPSAP18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP18 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPSAP18 Gene

Proteins for RPSAP18 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPSAP18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP18 Gene

Domains & Families for RPSAP18 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP18 Gene

Function for RPSAP18 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP18 Gene

Localization for RPSAP18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP18 Gene

Pathways & Interactions for RPSAP18 Gene

SuperPathways for RPSAP18 Gene

PathCards logo More details on SuperPathways for RPSAP18
No Data Available

Interacting Proteins for RPSAP18 Gene

Gene Ontology (GO) - Biological Process for RPSAP18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP18 Gene

Drugs & Compounds for RPSAP18 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPSAP18 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for RPSAP18 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP18 Gene

No ASD Table

Relevant External Links for RPSAP18 Gene

GeneLoc Exon Structure for
RPSAP18
ECgene alternative splicing isoforms for
RPSAP18

Expression for RPSAP18 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP18 Gene

mRNA expression in normal human tissues for RPSAP18 Gene
mRNA expression by GTEx for RPSAP18 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP18 Gene:

RPSAP18
genes like me logo Genes that share expression patterns with RPSAP18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP18 Gene

Orthologs for RPSAP18 Gene

Evolution for RPSAP18 Gene

ENSEMBL:
Gene Tree for RPSAP18 (if available)
TreeFam:
Gene Tree for RPSAP18 (if available)

No data available for Orthologs for RPSAP18 Gene

Paralogs for RPSAP18 Gene

No data available for Paralogs for RPSAP18 Gene

Variants for RPSAP18 Gene

Relevant External Links for RPSAP18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP18 Gene

Disorders for RPSAP18 Gene

No disorders were found for RPSAP18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP18 Gene

Publications for RPSAP18 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi D.J. … Shiio Y. (J. Proteome Res. 2014) 3 64

Products for RPSAP18 Gene

Sources for RPSAP18 Gene

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