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RPSAP18 Gene(Pseudogene)

Ribosomal Protein SA Pseudogene 18

GCID:
GC01M160238
GIFtS:
10
Genes Participants
UDN Logo

Aliases for RPSAP18 Gene

Aliases for RPSAP18 Gene

  • Ribosomal Protein SA Pseudogene 18 2 3 5
  • RPSA_4_107 3

External Ids for RPSAP18 Gene

Previous GeneCards Identifiers for RPSAP18 Gene

  • GC01M158504
  • GC01M160237

Summaries for RPSAP18 Gene

GeneCards Summary for RPSAP18 Gene

RPSAP18 (Ribosomal Protein SA Pseudogene 18) is a Pseudogene.

Additional gene information for RPSAP18 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP18 Gene

Genomics for RPSAP18 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPSAP18 Gene

Promoters and enhancers for RPSAP18 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I161096 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 46 -830.4 -830375 2.9 YBX1 FEZF1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 MCM3 KLHDC9 USP21 DUSP12 PPOX LOC100287049 DEDD NCSTN RPSAP18 LOC148430 DCAF8
GH01I159881 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 36.6 +385.2 385168 1.7 PKNOX1 SMAD1 ATF7 FOS DEK ZNF491 ZNF518A ZNF592 MAFF SMARCA4 RPSAP18 ENSG00000272668 SNHG28 LOC100287049 SLAMF8 PIGM DCAF8 CADM3 CADM3-AS1 COPA
GH01I160341 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 25.5 -75.7 -75737 3.3 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B NCSTN COPA SNHG28 RPSAP18 ENSG00000272668 USP21 DEDD B4GALT3 PPOX LOC100287049
GH01I161130 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 21.5 -865.1 -865078 3.9 FEZF1 DMAP1 YBX1 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 SP3 DEDD USP21 DUSP12 PPOX LOC100287049 B4GALT3 DCAF8 NCSTN ATF6 LOC148430
GH01I161011 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 16.2 -749.9 -749910 11.7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 DUSP12 USP21 LOC100287049 DEDD PPOX TSTD1 LOC148430 B4GALT3 ARHGAP30 KLHDC9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP18 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP18 Gene

Genomic Locations for RPSAP18 Gene
chr1:160,266,269-160,267,303
(GRCh38/hg38)
Size:
1,035 bases
Orientation:
Minus strand
chr1:160,236,059-160,237,093
(GRCh37/hg19)

Genomic View for RPSAP18 Gene

Genes around RPSAP18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP18 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPSAP18 Gene

Proteins for RPSAP18 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPSAP18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP18 Gene

Domains & Families for RPSAP18 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP18 Gene

Function for RPSAP18 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPSAP18 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP18 Gene

Localization for RPSAP18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP18 Gene

Pathways & Interactions for RPSAP18 Gene

SuperPathways for RPSAP18 Gene

PathCards logo More details on SuperPathways for RPSAP18
No Data Available

Interacting Proteins for RPSAP18 Gene

Gene Ontology (GO) - Biological Process for RPSAP18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP18 Gene

Drugs & Compounds for RPSAP18 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPSAP18 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPSAP18 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP18 Gene

No ASD Table

Relevant External Links for RPSAP18 Gene

GeneLoc Exon Structure for
RPSAP18
ECgene alternative splicing isoforms for
RPSAP18

Expression for RPSAP18 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP18 Gene

mRNA expression in normal human tissues for RPSAP18 Gene
mRNA expression by GTEx for RPSAP18 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP18 Gene:

RPSAP18
genes like me logo Genes that share expression patterns with RPSAP18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP18 Gene

Orthologs for RPSAP18 Gene

Evolution for RPSAP18 Gene

ENSEMBL:
Gene Tree for RPSAP18 (if available)
TreeFam:
Gene Tree for RPSAP18 (if available)

No data available for Orthologs for RPSAP18 Gene

Paralogs for RPSAP18 Gene

No data available for Paralogs for RPSAP18 Gene

Variants for RPSAP18 Gene

Additional Variant Information for RPSAP18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP18 Gene

Disorders for RPSAP18 Gene

No disorders were found for RPSAP18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP18 Gene

Publications for RPSAP18 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 58

Products for RPSAP18 Gene

Sources for RPSAP18 Gene

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