Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPSAP16 Gene

Aliases for RPSAP16 Gene

  • Ribosomal Protein SA Pseudogene 16 2 3 5
  • RPSA_1_135 3

External Ids for RPSAP16 Gene

Previous GeneCards Identifiers for RPSAP16 Gene

  • GC01U902290

Summaries for RPSAP16 Gene

GeneCards Summary for RPSAP16 Gene

RPSAP16 (Ribosomal Protein SA Pseudogene 16) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP16 Gene

Genomics for RPSAP16 Gene

Regulatory Elements for RPSAP16 Gene

Enhancers for RPSAP16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F179968 1.1 Ensembl ENCODE 0.8 +1.1 1106 2.2 HDAC1 PKNOX1 INSM2 FEZF1 ZNF335 ZNF366 SCRT2 ZNF391 ZNF362 OVOL3 LHX4 ENSG00000261831 QSOX1 RPSAP16 RPS24P5
GH01F179971 1 Ensembl 0.8 +3.2 3206 1.2 HDGF PKNOX1 ATF1 ARNT GATA2 NCOA1 REST MBD2 MEF2D SMARCA4 ENSG00000261831 RPSAP16 RPS24P5
GH01F179972 0.7 Ensembl 0.8 +4.1 4106 0.2 SMARCA5 HDGF LEF1 L3MBTL2 ARNT MTA2 ZNF407 USF2 REST ZBTB40 ENSG00000261831 RPSAP16 RPS24P5
GH01F179973 0.9 Ensembl 0.4 +5.2 5206 1.6 PKNOX1 INSM2 FEZF1 ZNF2 ZEB1 ZNF366 SCRT2 ZNF202 SMAD5 OVOL3 LHX4 ENSG00000261831 QSOX1 RPSAP16 RPS24P5
GH01F179976 0.5 Ensembl 0.4 +8.5 8506 0.6 IKZF1 HMBOX1 PRDM10 SUPT20H ENSG00000261831 RPSAP16 RPS24P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPSAP16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPSAP16 Gene

Chromosome:
1
Start:
179,968,595 bp from pter
End:
179,969,581 bp from pter
Size:
987 bases
Orientation:
Plus strand

Genomic View for RPSAP16 Gene

Genes around RPSAP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP16 Gene

Proteins for RPSAP16 Gene

Post-translational modifications for RPSAP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP16 Gene

Domains & Families for RPSAP16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP16 Gene

Function for RPSAP16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP16 Gene

Localization for RPSAP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPSAP16 Gene

Pathways & Interactions for RPSAP16 Gene

SuperPathways for RPSAP16 Gene

No Data Available

Interacting Proteins for RPSAP16 Gene

Gene Ontology (GO) - Biological Process for RPSAP16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP16 Gene

Transcripts for RPSAP16 Gene

mRNA/cDNA for RPSAP16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP16 Gene

No ASD Table

Relevant External Links for RPSAP16 Gene

GeneLoc Exon Structure for
RPSAP16
ECgene alternative splicing isoforms for
RPSAP16

Expression for RPSAP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP16 Gene:

RPSAP16
genes like me logo Genes that share expression patterns with RPSAP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPSAP16 Gene

Orthologs for RPSAP16 Gene

Evolution for RPSAP16 Gene

ENSEMBL:
Gene Tree for RPSAP16 (if available)
TreeFam:
Gene Tree for RPSAP16 (if available)

No data available for Orthologs for RPSAP16 Gene

Paralogs for RPSAP16 Gene

No data available for Paralogs for RPSAP16 Gene

Variants for RPSAP16 Gene

Relevant External Links for RPSAP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP16 Gene

Disorders for RPSAP16 Gene

No disorders were found for RPSAP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP16 Gene

Publications for RPSAP16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPSAP16 Gene

Sources for RPSAP16 Gene

Content
Loading form....