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Aliases for RPSAP1 Gene

Aliases for RPSAP1 Gene

  • Ribosomal Protein SA Pseudogene 1 2 3 5
  • Laminin Receptor 1 Pseudogene 1 2 3
  • RPSA_24_1712 3
  • DJ1193N1.1 3
  • LAMR1P1 3
  • LAMR1P 3

External Ids for RPSAP1 Gene

Previous HGNC Symbols for RPSAP1 Gene

  • LAMR1P
  • LAMR1P1

Previous GeneCards Identifiers for RPSAP1 Gene

  • GC20M049181
  • GC20M049747
  • GC20M046495

Summaries for RPSAP1 Gene

GeneCards Summary for RPSAP1 Gene

RPSAP1 (Ribosomal Protein SA Pseudogene 1) is a Pseudogene.

Additional gene information for RPSAP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPSAP1 Gene

Genomics for RPSAP1 Gene

GeneHancer (GH) Regulatory Elements for RPSAP1 Gene

Promoters and enhancers for RPSAP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I051132 Enhancer 0.2 ENCODE 550.8 -1.0 -1045 0.8 RPSAP1 ATP9A LOC105372661 GC20P051206
GH20I051127 Enhancer 0.6 ENCODE 0.8 +3.0 3018 2 SCRT1 GATAD2B JUND POLR2A SCRT2 FOS RCOR1 CHD2 ENSG00000232358 KCNG1 RPSAP1 LOC105372662 LOC105372661
GH20I051134 Enhancer 0.5 ENCODE 0.8 -4.3 -4335 4.1 SCRT1 PKNOX1 SCRT2 REST RPSAP1 LOC105372661 GC20P051206
GH20I051142 Enhancer 0.7 ENCODE 0.4 -10.9 -10876 0.2 SIX4 PKNOX1 NEUROD1 SIN3A BMI1 MTA3 CTBP1 GATA3 ZNF444 RCOR1 LINC01273 RPSAP1 LOC105372661 GC20P051206
GH20I051125 Enhancer 0.5 ENCODE 0.4 +5.5 5524 1.3 SMARCE1 ZNF217 CTBP1 GATA3 DPF2 ENSG00000232358 LOC105372662 LOC105372661 RPSAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPSAP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPSAP1 Gene

Genomic Locations for RPSAP1 Gene
chr20:51,130,704-51,131,743
(GRCh38/hg38)
Size:
1,040 bases
Orientation:
Minus strand
chr20:49,747,241-49,748,280
(GRCh37/hg19)

Genomic View for RPSAP1 Gene

Genes around RPSAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP1 Gene

Proteins for RPSAP1 Gene

Post-translational modifications for RPSAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP1 Gene

Domains & Families for RPSAP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPSAP1 Gene

Function for RPSAP1 Gene

Phenotypes From GWAS Catalog for RPSAP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP1 Gene

Localization for RPSAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP1 Gene

Pathways & Interactions for RPSAP1 Gene

SuperPathways for RPSAP1 Gene

No Data Available

Interacting Proteins for RPSAP1 Gene

Gene Ontology (GO) - Biological Process for RPSAP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPSAP1 Gene

Drugs & Compounds for RPSAP1 Gene

No Compound Related Data Available

Transcripts for RPSAP1 Gene

mRNA/cDNA for RPSAP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP1 Gene

No ASD Table

Relevant External Links for RPSAP1 Gene

GeneLoc Exon Structure for
RPSAP1
ECgene alternative splicing isoforms for
RPSAP1

Expression for RPSAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPSAP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPSAP1 Gene:

RPSAP1
genes like me logo Genes that share expression patterns with RPSAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP1 Gene

Orthologs for RPSAP1 Gene

Evolution for RPSAP1 Gene

ENSEMBL:
Gene Tree for RPSAP1 (if available)
TreeFam:
Gene Tree for RPSAP1 (if available)

No data available for Orthologs for RPSAP1 Gene

Paralogs for RPSAP1 Gene

No data available for Paralogs for RPSAP1 Gene

Variants for RPSAP1 Gene

Additional Variant Information for RPSAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP1 Gene

Disorders for RPSAP1 Gene

Additional Disease Information for RPSAP1

Genetic Association Database
(GAD)

No disorders were found for RPSAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP1 Gene

Publications for RPSAP1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval. (PMID: 23459443) Avery CL … Psaty BM (The pharmacogenomics journal 2014) 3 58
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58

Products for RPSAP1 Gene

Sources for RPSAP1 Gene

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