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RPS8P8 Gene(Pseudogene)

Ribosomal Protein S8 Pseudogene 8

GCID:
GC05P033201
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RPS8P8 Gene

Subcategory (RNA class) for RPS8P8 Gene

lncRNA

Aliases for RPS8P8 Gene

  • Ribosomal Protein S8 Pseudogene 8 2 3
  • RPS8_1_552 3
  • AC010343.1 5

External Ids for RPS8P8 Gene

ORGUL Members for RPS8P8 Gene

Summaries for RPS8P8 Gene

GeneCards Summary for RPS8P8 Gene

RPS8P8 (Ribosomal Protein S8 Pseudogene 8) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS8P8 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS8P8 Gene

Genomics for RPS8P8 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPS8P8 Gene

Promoters and enhancers for RPS8P8 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH05I033439 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.8 +279.1 279132 4.3 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ZNF610 GLIS1 ENSG00000249572 TARS GC05M033441 PIR33729 RPS8P8 LOC643373 RXFP3 GC05P033478
GH05I032170 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.9 -989.1 -989149 5.2 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF263 ZNF610 GLIS1 NBN ENSG00000272086 GOLPH3 GC05P032175 MTMR12 DROSHA RPS8P8 RPL27P10 GC05P032142
GH05I033146 Enhancer 0.9 Ensembl ENCODE 0.4 -14.2 -14200 2.6 NFIB JUN MAX RAD21 BRCA1 RFX5 POLR2A SMC3 RCOR1 FOSL2 RPS8P8 ENSG00000250672 ENSG00000250697
GH05I033195 Enhancer 0.6 ENCODE 0.3 +33.6 33595 1.3 JUN ZNF529 CEBPB EP300 ATF2 SP1 JUND ATF7 SETDB1 ZFR ENSG00000250697 RPS8P8 LINC02160
GH05I033091 Enhancer 0.5 ENCODE 0.2 -70.4 -70416 0.2 JUND JUN CEBPB EP300 ENSG00000250672 RPS8P8 ENSG00000250697
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS8P8 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS8P8 Gene

Genomic Locations for RPS8P8 Gene
chr5:33,162,156-33,162,859
(GRCh38/hg38)
Size:
704 bases
Orientation:
Plus strand
chr5:33,162,262-33,162,965
(GRCh37/hg19)

Genomic View for RPS8P8 Gene

Genes around RPS8P8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS8P8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS8P8 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS8P8 Gene

Proteins for RPS8P8 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS8P8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS8P8 Gene

Domains & Families for RPS8P8 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS8P8 Gene

Function for RPS8P8 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPS8P8 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS8P8 Gene

Localization for RPS8P8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS8P8 Gene

Pathways & Interactions for RPS8P8 Gene

SuperPathways for RPS8P8 Gene

PathCards logo More details on SuperPathways for RPS8P8
No Data Available

Interacting Proteins for RPS8P8 Gene

Gene Ontology (GO) - Biological Process for RPS8P8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS8P8 Gene

Drugs & Compounds for RPS8P8 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS8P8 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPS8P8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS8P8 Gene

No ASD Table

Relevant External Links for RPS8P8 Gene

GeneLoc Exon Structure for
RPS8P8
ECgene alternative splicing isoforms for
RPS8P8

Expression for RPS8P8 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS8P8 Gene

mRNA expression in normal human tissues for RPS8P8 Gene
mRNA expression by GTEx for RPS8P8 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS8P8 Gene:

RPS8P8
genes like me logo Genes that share expression patterns with RPS8P8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS8P8 Gene

Orthologs for RPS8P8 Gene

Evolution for RPS8P8 Gene

ENSEMBL:
Gene Tree for RPS8P8 (if available)
TreeFam:
Gene Tree for RPS8P8 (if available)

No data available for Orthologs for RPS8P8 Gene

Paralogs for RPS8P8 Gene

No data available for Paralogs for RPS8P8 Gene

Variants for RPS8P8 Gene

Additional Variant Information for RPS8P8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS8P8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS8P8 Gene

Disorders for RPS8P8 Gene

Additional Disease Information for RPS8P8

Genetic Association Database
(GAD)

No disorders were found for RPS8P8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS8P8 Gene

Publications for RPS8P8 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS8P8 Gene

Sources for RPS8P8 Gene

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