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RPS8P8 Gene(Pseudogene)

Ribosomal Protein S8 Pseudogene 8

GCID:
GC05P033201
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RPS8P8 Gene

Subcategory (RNA class) for RPS8P8 Gene

lncRNA

Aliases for RPS8P8 Gene

  • Ribosomal Protein S8 Pseudogene 8 2 3
  • RP11-36C20.1 5
  • RPS8_1_552 3

External Ids for RPS8P8 Gene

ORGUL Members for RPS8P8 Gene

Summaries for RPS8P8 Gene

GeneCards Summary for RPS8P8 Gene

RPS8P8 (Ribosomal Protein S8 Pseudogene 8) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS8P8 Gene

Genomics for RPS8P8 Gene

Products:

  1. Regulatory Element

Regulatory Elements for RPS8P8 Gene

Enhancers for RPS8P8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F032170 1.2 ENCODE 19.3 -989.1 -989149 5.2 HDGF ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5 MTMR12 RPS8P8 RPL27P10 GC05P032175 GC05P032142
GH05F032582 1.4 FANTOM5 ENCODE 11.1 -577.2 -577183 5.3 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 SUB1 LOC646616 MTMR12 RPS8P8 ZFR ENSG00000249572 GC05M032623
GH05F032442 1.4 FANTOM5 ENCODE 10.1 -717.2 -717221 5.0 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 GOLPH3 ENSG00000249572 MIR579 RPS8P8 MTMR12 ZFR LOC646616
GH05F033439 1.2 ENCODE 9.9 +279.1 279132 4.3 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ENSG00000249572 LOC643373 TARS RXFP3 RPS8P8 GC05P033478
GH05F032200 1.1 Ensembl ENCODE 10.1 -961.1 -961140 1.6 TBP INSM2 KLF17 BRCA1 RAD21 YY1 GTF3C2 SMARCC2 RCOR1 FOS MTMR12 RPS8P8 GC05P032208 ENSG00000272086
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS8P8 on UCSC Golden Path with GeneCards custom track

Promoters for RPS8P8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001867905 45 399

Genomic Location for RPS8P8 Gene

Chromosome:
5
Start:
33,162,156 bp from pter
End:
33,162,859 bp from pter
Size:
704 bases
Orientation:
Plus strand

Genomic View for RPS8P8 Gene

Genes around RPS8P8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS8P8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS8P8 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS8P8 Gene

Proteins for RPS8P8 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS8P8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS8P8 Gene

Domains & Families for RPS8P8 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS8P8 Gene

Function for RPS8P8 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS8P8 Gene

Localization for RPS8P8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS8P8 Gene

Pathways & Interactions for RPS8P8 Gene

SuperPathways for RPS8P8 Gene

PathCards logo More details on SuperPathways for RPS8P8
No Data Available

Interacting Proteins for RPS8P8 Gene

Gene Ontology (GO) - Biological Process for RPS8P8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS8P8 Gene

Drugs & Compounds for RPS8P8 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS8P8 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for RPS8P8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS8P8 Gene

No ASD Table

Relevant External Links for RPS8P8 Gene

GeneLoc Exon Structure for
RPS8P8
ECgene alternative splicing isoforms for
RPS8P8

Expression for RPS8P8 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS8P8 Gene

mRNA expression in normal human tissues for RPS8P8 Gene
mRNA expression by GTEx for RPS8P8 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS8P8 Gene:

RPS8P8
genes like me logo Genes that share expression patterns with RPS8P8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS8P8 Gene

Orthologs for RPS8P8 Gene

Evolution for RPS8P8 Gene

ENSEMBL:
Gene Tree for RPS8P8 (if available)
TreeFam:
Gene Tree for RPS8P8 (if available)

No data available for Orthologs for RPS8P8 Gene

Paralogs for RPS8P8 Gene

No data available for Paralogs for RPS8P8 Gene

Variants for RPS8P8 Gene

Relevant External Links for RPS8P8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS8P8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS8P8 Gene

Disorders for RPS8P8 Gene

Relevant External Links for RPS8P8

Genetic Association Database (GAD)
RPS8P8

No disorders were found for RPS8P8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS8P8 Gene

Publications for RPS8P8 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS8P8 Gene

Sources for RPS8P8 Gene

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