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Aliases for RPS7P5 Gene

Aliases for RPS7P5 Gene

  • Ribosomal Protein S7 Pseudogene 5 2 3 5
  • RPS7_2_183 3

External Ids for RPS7P5 Gene

Previous GeneCards Identifiers for RPS7P5 Gene

  • GC01P238238
  • GC01P240171
  • GC01P240175

Summaries for RPS7P5 Gene

GeneCards Summary for RPS7P5 Gene

RPS7P5 (Ribosomal Protein S7 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS7P5 Gene

Genomics for RPS7P5 Gene

Regulatory Elements for RPS7P5 Gene

Enhancers for RPS7P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F240091 0.5 ENCODE 16.3 +85.2 85186 2.4 PKNOX1 SIN3A ZNF2 ZNF121 GLIS2 ZNF202 ZNF263 SP3 REST MAFF RPS7P5 LOC105373223 RFKP1 GC01M240060 FMN2
GH01F240029 0.4 ENCODE 5.3 +23.5 23461 3.1 PKNOX1 JUN BHLHE40 ZMYM3 SIN3A RAD21 JUND SMARCA4 POLR2A FOS ENSG00000233735 FMN2 RPS7P5 GC01M240060
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS7P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS7P5 Gene

Chromosome:
1
Start:
240,007,524 bp from pter
End:
240,013,260 bp from pter
Size:
5,737 bases
Orientation:
Plus strand

Genomic View for RPS7P5 Gene

Genes around RPS7P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS7P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS7P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS7P5 Gene

Proteins for RPS7P5 Gene

Post-translational modifications for RPS7P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS7P5 Gene

Domains & Families for RPS7P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS7P5 Gene

Function for RPS7P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS7P5 Gene

Localization for RPS7P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS7P5 Gene

Pathways & Interactions for RPS7P5 Gene

SuperPathways for RPS7P5 Gene

No Data Available

Interacting Proteins for RPS7P5 Gene

Gene Ontology (GO) - Biological Process for RPS7P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS7P5 Gene

Transcripts for RPS7P5 Gene

mRNA/cDNA for RPS7P5 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS7P5 Gene

Ribosomal protein S7 pseudogene 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPS7P5 Gene

No ASD Table

Relevant External Links for RPS7P5 Gene

GeneLoc Exon Structure for
RPS7P5
ECgene alternative splicing isoforms for
RPS7P5

Expression for RPS7P5 Gene

mRNA expression in normal human tissues for RPS7P5 Gene

mRNA differential expression in normal tissues according to GTEx for RPS7P5 Gene

This gene is overexpressed in Testis (x52.7).

NURSA nuclear receptor signaling pathways regulating expression of RPS7P5 Gene:

RPS7P5

SOURCE GeneReport for Unigene cluster for RPS7P5 Gene:

Hs.613280
genes like me logo Genes that share expression patterns with RPS7P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS7P5 Gene

Orthologs for RPS7P5 Gene

Evolution for RPS7P5 Gene

ENSEMBL:
Gene Tree for RPS7P5 (if available)
TreeFam:
Gene Tree for RPS7P5 (if available)

No data available for Orthologs for RPS7P5 Gene

Paralogs for RPS7P5 Gene

No data available for Paralogs for RPS7P5 Gene

Variants for RPS7P5 Gene

Sequence variations from dbSNP and Humsavar for RPS7P5 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10436942 -- 240,013,554(+) GTGGC(A/G)CAACC downstream-variant-500B, upstream-variant-2KB
rs10436943 -- 240,013,582(+) CCTGC(C/T)TCAGG downstream-variant-500B, upstream-variant-2KB
rs10802824 -- 240,010,444(+) CCTTT(C/T)CTTTC intron-variant
rs10802825 -- 240,013,300(+) GGTGG(A/G)ATAAG downstream-variant-500B, upstream-variant-2KB
rs10802826 -- 240,013,333(+) AATCT(A/G)CAAAA downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPS7P5 Gene

Variant ID Type Subtype PubMed ID
esv2759009 CNV gain 17122850
esv35011 CNV gain 17911159
esv3589291 CNV gain 21293372
esv3589293 CNV gain 21293372
esv3891259 CNV gain 25118596
nsv519393 CNV gain 19592680
nsv519885 CNV gain 19592680
nsv827531 CNV gain 20364138
nsv827542 CNV gain 20364138

Relevant External Links for RPS7P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS7P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS7P5 Gene

Disorders for RPS7P5 Gene

Relevant External Links for RPS7P5

Genetic Association Database (GAD)
RPS7P5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS7P5

No disorders were found for RPS7P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS7P5 Gene

Publications for RPS7P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PMID: 17903298) Meigs J.B. … Dupuis J. (BMC Med. Genet. 2007) 46 64
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 46 64
  5. Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes. (PMID: 17903304) Larson M.G. … Levy D. (BMC Med. Genet. 2007) 46 64

Products for RPS7P5 Gene

Sources for RPS7P5 Gene

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