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Aliases for RPS6P20 Gene

Subcategory (RNA class) for RPS6P20 Gene

lncRNA

Aliases for RPS6P20 Gene

  • Ribosomal Protein S6 Pseudogene 20 2 3
  • RPS6_10_1296 3
  • AC092850.1 5

External Ids for RPS6P20 Gene

ORGUL Members for RPS6P20 Gene

Previous GeneCards Identifiers for RPS6P20 Gene

  • GC12U901071
  • GC12M131777

Summaries for RPS6P20 Gene

GeneCards Summary for RPS6P20 Gene

RPS6P20 (Ribosomal Protein S6 Pseudogene 20) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS6P20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS6P20 Gene

Genomics for RPS6P20 Gene

Regulatory Elements for RPS6P20 Gene

Enhancers for RPS6P20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H130583 1.1 dbSUPER 14.6 +709.0 709016 1 HDGF ATF1 FOXA2 ARNT ZNF493 YBX1 GLI4 ZNF2 ZNF416 ZNF207 FZD10-AS1 ENSG00000256299 ENSG00000261650 RPS20P30 RPS6P20 STX2 LOC105370079 PIR53413
GH12H132153 1.1 Ensembl ENCODE 14.6 -860.9 -860864 1 RB1 ARID4B KLF17 SIN3A ZNF2 ZSCAN9 RAD21 ZNF121 GLIS2 ZNF143 DDX51 RPS6P21 RPS6P20 EP400NL GC12P132155 NOC4L
GH12H131228 1.8 FANTOM5 Ensembl ENCODE dbSUPER 8.7 +63.0 62999 2 HDGF PKNOX1 ARNT FEZF1 TCF12 GLIS2 GATA2 ATF7 GTF2B NFYC EP400 SFSWAP EP400NL ENSG00000255933 ENSG00000256299 RPS6P20 ENSG00000256250 LINC02370 ENSG00000280217 LINC01257
GH12H131233 1 ENCODE dbSUPER 4.7 +58.8 58830 1 PKNOX1 NFIB BMI1 ZFHX2 GATA3 POLR2A SCRT2 SMARCE1 RFX1 ZNF687 LINC01257 ENSG00000256250 RPS6P20 ENSG00000280217
GH12H131246 0.5 dbSUPER 7.8 +46.1 46117 1 PKNOX1 L3MBTL2 ZSCAN4 MGA ZNF592 RPS6P20 LINC01257 ENSG00000280217 LOC105370082
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS6P20 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS6P20 Gene

Chromosome:
12
Start:
131,292,068 bp from pter
End:
131,293,176 bp from pter
Size:
1,109 bases
Orientation:
Minus strand

Genomic View for RPS6P20 Gene

Genes around RPS6P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS6P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS6P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS6P20 Gene

Proteins for RPS6P20 Gene

Post-translational modifications for RPS6P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS6P20 Gene

Domains & Families for RPS6P20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS6P20 Gene

Function for RPS6P20 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS6P20
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS6P20 Gene

Localization for RPS6P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS6P20 Gene

Pathways & Interactions for RPS6P20 Gene

SuperPathways for RPS6P20 Gene

No Data Available

Interacting Proteins for RPS6P20 Gene

Gene Ontology (GO) - Biological Process for RPS6P20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS6P20 Gene

Drugs & Compounds for RPS6P20 Gene

No Compound Related Data Available

Transcripts for RPS6P20 Gene

mRNA/cDNA for RPS6P20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS6P20
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS6P20 Gene

No ASD Table

Relevant External Links for RPS6P20 Gene

GeneLoc Exon Structure for
RPS6P20
ECgene alternative splicing isoforms for
RPS6P20

Expression for RPS6P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS6P20 Gene

mRNA differential expression in normal tissues according to GTEx for RPS6P20 Gene

This gene is overexpressed in Testis (x52.2).

NURSA nuclear receptor signaling pathways regulating expression of RPS6P20 Gene:

RPS6P20
genes like me logo Genes that share expression patterns with RPS6P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS6P20 Gene

Orthologs for RPS6P20 Gene

Evolution for RPS6P20 Gene

ENSEMBL:
Gene Tree for RPS6P20 (if available)
TreeFam:
Gene Tree for RPS6P20 (if available)

No data available for Orthologs for RPS6P20 Gene

Paralogs for RPS6P20 Gene

No data available for Paralogs for RPS6P20 Gene

Variants for RPS6P20 Gene

Variation tolerance for RPS6P20 Gene

Gene Damage Index Score: 9.26; 88.15% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPS6P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS6P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RPS6P20 Gene

Disorders for RPS6P20 Gene

Relevant External Links for RPS6P20

Genetic Association Database (GAD)
RPS6P20

No disorders were found for RPS6P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS6P20 Gene

Publications for RPS6P20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Joint influence of small-effect genetic variants on human longevity. (PMID: 20834067) Yashin AI … Ukraintseva SV (Aging 2010) 45 60
  3. Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium. (PMID: 20400778) Morrison AC … Smith NL (Circulation. Cardiovascular genetics 2010) 45 60
  4. A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PMID: 18464913) Melzer D … Ferrucci L (PLoS genetics 2008) 45 60

Products for RPS6P20 Gene

Sources for RPS6P20 Gene

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