Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS6P16 Gene

Subcategory (RNA class) for RPS6P16 Gene

lncRNA

Aliases for RPS6P16 Gene

  • Ribosomal Protein S6 Pseudogene 16 2 3
  • RPS6_8_1176 3

External Ids for RPS6P16 Gene

ORGUL Members for RPS6P16 Gene

Previous GeneCards Identifiers for RPS6P16 Gene

  • GC11M111612
  • GC11M112107

Summaries for RPS6P16 Gene

GeneCards Summary for RPS6P16 Gene

RPS6P16 (Ribosomal Protein S6 Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS6P16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS6P16 Gene

Genomics for RPS6P16 Gene

GeneHancer (GH) Regulatory Elements for RPS6P16 Gene

Promoters and enhancers for RPS6P16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I112225 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 +7.8 7807 5.3 FOXA2 SMAD1 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF143 FOS SP3 PTS LOC283140 PLET1 ENSG00000255292 SDHD TIMM8B BCO2 RPS6P16
GH11I112231 Enhancer 0.7 ENCODE 0.8 +3.9 3894 1.1 SOX5 SOX13 SAP130 HLF ZNF644 PPARG ZNF48 RARA NFIL3 ZGPAT PLET1 ENSG00000255292 LOC283140 RPS6P16 PTS
GH11I112254 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -19.5 -19450 1.7 HDGF BCOR PKNOX1 ATF1 ZNF211 SUZ12 JUN ZSCAN4 CDC5L IRF9 LOC100132686 PLET1 RPS6P16 PTS
GH11I112240 Enhancer 0.9 ENCODE dbSUPER 0.4 -5.4 -5403 2.1 SOX13 TFAP4 FOXA2 MAX ETS1 TEAD3 CTBP1 GATA3 RCOR1 ATF7 TEX12 ENSG00000255292 RNU6-44P BCO2 RPS6P16 PTS LOC100132686
GH11I112253 Enhancer 0.8 ENCODE dbSUPER 0.4 -17.9 -17853 1.4 HDGF ZNF639 BCOR ZSCAN4 CEBPB CDC5L IRF9 POLR2A ZNF18 LOC283140 PLET1 LOC100132686 RPS6P16 PTS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS6P16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS6P16 Gene

Genomic Locations for RPS6P16 Gene
chr11:112,235,364-112,236,043
(GRCh38/hg38)
Size:
680 bases
Orientation:
Minus strand
chr11:112,106,087-112,106,766
(GRCh37/hg19)

Genomic View for RPS6P16 Gene

Genes around RPS6P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS6P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS6P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS6P16 Gene

Proteins for RPS6P16 Gene

Post-translational modifications for RPS6P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS6P16 Gene

Domains & Families for RPS6P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS6P16 Gene

Function for RPS6P16 Gene

Phenotypes From GWAS Catalog for RPS6P16 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS6P16 Gene

Localization for RPS6P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS6P16 Gene

Pathways & Interactions for RPS6P16 Gene

SuperPathways for RPS6P16 Gene

No Data Available

Interacting Proteins for RPS6P16 Gene

Gene Ontology (GO) - Biological Process for RPS6P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS6P16 Gene

Drugs & Compounds for RPS6P16 Gene

No Compound Related Data Available

Transcripts for RPS6P16 Gene

mRNA/cDNA for RPS6P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS6P16 Gene

No ASD Table

Relevant External Links for RPS6P16 Gene

GeneLoc Exon Structure for
RPS6P16
ECgene alternative splicing isoforms for
RPS6P16

Expression for RPS6P16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS6P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS6P16 Gene:

RPS6P16
genes like me logo Genes that share expression patterns with RPS6P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS6P16 Gene

Orthologs for RPS6P16 Gene

Evolution for RPS6P16 Gene

ENSEMBL:
Gene Tree for RPS6P16 (if available)
TreeFam:
Gene Tree for RPS6P16 (if available)

No data available for Orthologs for RPS6P16 Gene

Paralogs for RPS6P16 Gene

No data available for Paralogs for RPS6P16 Gene

Variants for RPS6P16 Gene

Additional Variant Information for RPS6P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS6P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS6P16 Gene

Disorders for RPS6P16 Gene

No disorders were found for RPS6P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS6P16 Gene

Publications for RPS6P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS6P16 Gene

Sources for RPS6P16 Gene

Content
Loading form....