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Aliases for RPS6P16 Gene

Subcategory (RNA class) for RPS6P16 Gene

lncRNA

Aliases for RPS6P16 Gene

  • Ribosomal Protein S6 Pseudogene 16 2 3
  • RPS6_8_1176 3
  • AP002884.1 5

External Ids for RPS6P16 Gene

ORGUL Members for RPS6P16 Gene

Previous GeneCards Identifiers for RPS6P16 Gene

  • GC11M111612
  • GC11M112107

Summaries for RPS6P16 Gene

GeneCards Summary for RPS6P16 Gene

RPS6P16 (Ribosomal Protein S6 Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS6P16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS6P16 Gene

Genomics for RPS6P16 Gene

Regulatory Elements for RPS6P16 Gene

Enhancers for RPS6P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H111774 1.2 Ensembl ENCODE dbSUPER 9.9 +460.7 460674 1 STAT1 MAX REST RAD21 YY1 ZNF121 GTF3C2 JUND ATF3 POLR3A SIK2 ALG9 POU2AF1 LOC644277 LAYN RPS6P16 C11orf88 MIR34B MIR34C BTG4
GH11H112225 1.3 ENCODE dbSUPER 0.4 +7.8 7808 5 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS SP3 SP5 NFYC LOC283140 PLET1 TIMM8B SDHD BCO2 PTS RPS6P16
GH11H112254 1.3 Ensembl ENCODE dbSUPER 0.4 -19.5 -19451 1 BCOR HDGF PKNOX1 ATF1 ZNF211 SUZ12 JUN ZSCAN4 CDC5L FOSL1 LOC100132686 RPS6P16
GH11H112231 0.7 ENCODE 0.7 +3.9 3895 1 SOX5 SOX13 SAP130 HLF PPARG ZNF644 RARA NFIL3 ZGPAT CEBPA PLET1 LOC283140 RPS6P16 PTS
GH11H112240 1 ENCODE dbSUPER 0.4 -5.4 -5404 2 SOX13 TFAP4 FOXA2 MAX TEAD3 CTBP1 GATA3 RCOR1 ATF7 SOX5 TEX12 RNU6-44P BCO2 RPS6P16 LOC100132686
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS6P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS6P16 Gene

Chromosome:
11
Start:
112,235,364 bp from pter
End:
112,236,043 bp from pter
Size:
680 bases
Orientation:
Minus strand

Genomic View for RPS6P16 Gene

Genes around RPS6P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS6P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS6P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS6P16 Gene

Proteins for RPS6P16 Gene

Post-translational modifications for RPS6P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS6P16 Gene

Domains & Families for RPS6P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS6P16 Gene

Function for RPS6P16 Gene

Phenotypes From GWAS Catalog for RPS6P16 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS6P16
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS6P16 Gene

Localization for RPS6P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS6P16 Gene

Pathways & Interactions for RPS6P16 Gene

SuperPathways for RPS6P16 Gene

No Data Available

Interacting Proteins for RPS6P16 Gene

Gene Ontology (GO) - Biological Process for RPS6P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS6P16 Gene

Drugs & Compounds for RPS6P16 Gene

No Compound Related Data Available

Transcripts for RPS6P16 Gene

mRNA/cDNA for RPS6P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS6P16
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS6P16 Gene

No ASD Table

Relevant External Links for RPS6P16 Gene

GeneLoc Exon Structure for
RPS6P16
ECgene alternative splicing isoforms for
RPS6P16

Expression for RPS6P16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS6P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS6P16 Gene:

RPS6P16
genes like me logo Genes that share expression patterns with RPS6P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS6P16 Gene

Orthologs for RPS6P16 Gene

Evolution for RPS6P16 Gene

ENSEMBL:
Gene Tree for RPS6P16 (if available)
TreeFam:
Gene Tree for RPS6P16 (if available)

No data available for Orthologs for RPS6P16 Gene

Paralogs for RPS6P16 Gene

No data available for Paralogs for RPS6P16 Gene

Variants for RPS6P16 Gene

Relevant External Links for RPS6P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS6P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS6P16 Gene

Disorders for RPS6P16 Gene

No disorders were found for RPS6P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS6P16 Gene

Publications for RPS6P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPS6P16 Gene

Sources for RPS6P16 Gene

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