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Aliases for RPS6P16 Gene

Subcategory (RNA class) for RPS6P16 Gene

lncRNA

Aliases for RPS6P16 Gene

  • Ribosomal Protein S6 Pseudogene 16 2 3 5
  • RPS6_8_1176 3

External Ids for RPS6P16 Gene

ORGUL Members for RPS6P16 Gene

Previous GeneCards Identifiers for RPS6P16 Gene

  • GC11M111612
  • GC11M112107

Summaries for RPS6P16 Gene

GeneCards Summary for RPS6P16 Gene

RPS6P16 (Ribosomal Protein S6 Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS6P16 Gene

Genomics for RPS6P16 Gene

Regulatory Elements for RPS6P16 Gene

Enhancers for RPS6P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F112073 0.6 ENCODE 11 +161.8 161800 2.3 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PPP2R1B RPS6P16 SDHD SIK2 C11orf57 PIH1D2
GH11F112023 1.1 ENCODE 11 +210.9 210917 2.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 PPP2R1B C11orf57 PIH1D2 DIXDC1 RPS6P16 CRYAB C11orf52 DLAT GC11M112030
GH11F112113 0.7 Ensembl ENCODE 11 +122.3 122342 0.6 CTCF GTF2E2 ZNF140 RAD21 ZNF101 ZNF664 ZNF143 SMC3 ZNF680 ZNF654 RPS6P16 LOC101928847 ENSG00000255292 IL18
GH11F113130 0.6 ENCODE 10.9 -896.0 -896042 3.3 SCRT1 ZNF362 ZNF280D ZEB2 ATF2 NR2F2 ZNF264 SMARCA4 SCRT2 GLIS1 ZW10 RPS6P16 ENSG00000270179 BCO2 NCAM1-AS1 GC11P112980
GH11F111764 0.2 ENCODE 10.9 +470.0 470028 3.3 ZNF493 ARID4B SIN3A ZNF48 YY1 ZNF121 GLIS2 ZNF202 SP3 NCOA1 SIK2 PPP2R1B ENSG00000255334 ALG9 RPS6P16 PIH1D2 LAYN BTG4 C11orf88 MIR34B
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS6P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS6P16 Gene

Chromosome:
11
Start:
112,235,364 bp from pter
End:
112,236,043 bp from pter
Size:
680 bases
Orientation:
Minus strand

Genomic View for RPS6P16 Gene

Genes around RPS6P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS6P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS6P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS6P16 Gene

Proteins for RPS6P16 Gene

Post-translational modifications for RPS6P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS6P16 Gene

Domains & Families for RPS6P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS6P16 Gene

Function for RPS6P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS6P16 Gene

Localization for RPS6P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS6P16 Gene

Pathways & Interactions for RPS6P16 Gene

SuperPathways for RPS6P16 Gene

No Data Available

Interacting Proteins for RPS6P16 Gene

Gene Ontology (GO) - Biological Process for RPS6P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS6P16 Gene

Transcripts for RPS6P16 Gene

mRNA/cDNA for RPS6P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS6P16 Gene

No ASD Table

Relevant External Links for RPS6P16 Gene

GeneLoc Exon Structure for
RPS6P16
ECgene alternative splicing isoforms for
RPS6P16

Expression for RPS6P16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS6P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS6P16 Gene:

RPS6P16
genes like me logo Genes that share expression patterns with RPS6P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS6P16 Gene

Orthologs for RPS6P16 Gene

Evolution for RPS6P16 Gene

ENSEMBL:
Gene Tree for RPS6P16 (if available)
TreeFam:
Gene Tree for RPS6P16 (if available)

No data available for Orthologs for RPS6P16 Gene

Paralogs for RPS6P16 Gene

No data available for Paralogs for RPS6P16 Gene

Variants for RPS6P16 Gene

Relevant External Links for RPS6P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS6P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS6P16 Gene

Disorders for RPS6P16 Gene

No disorders were found for RPS6P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS6P16 Gene

Publications for RPS6P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS6P16 Gene

Sources for RPS6P16 Gene

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