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Aliases for RPS6KA2-IT1 Gene

Subcategory (RNA class) for RPS6KA2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RPS6KA2-IT1 Gene

  • RPS6KA2 Intronic Transcript 1 2 3 5
  • RPS6KA2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for RPS6KA2-IT1 Gene

Previous GeneCards Identifiers for RPS6KA2-IT1 Gene

  • GC00U933575
  • GC06M166875

Summaries for RPS6KA2-IT1 Gene

GeneCards Summary for RPS6KA2-IT1 Gene

RPS6KA2-IT1 (RPS6KA2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS6KA2-IT1 Gene

Genomics for RPS6KA2-IT1 Gene

Regulatory Elements for RPS6KA2-IT1 Gene

Enhancers for RPS6KA2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F166465 1 Ensembl ENCODE 0.8 -1.0 -991 2.0 CTCF ATF1 SIN3A RAD21 ZNF316 ZNF366 FOS CREM MAFK SCRT1 RPS6KA2-IT1 MIR1913
GH06F166463 0.8 Ensembl ENCODE 0.8 +1.8 1832 0.9 JUND MAFG FOS NFE2 NFE2L2 RPS6KA2-IT1 PIR46600
GH06F166487 1.3 FANTOM5 Ensembl ENCODE 0.3 -22.8 -22836 2.0 KLF1 ATF1 CBX3 ZBTB40 CBX5 POLR2A ETV6 REST GABPA NR2F2 RNASET2 SFT2D1 MIR1913 RPS6KA2-IT1
GH06F166439 0.9 Ensembl ENCODE 0.3 +25.5 25497 0.2 PKNOX1 ETV1 ZFP64 SIN3A MAX GATA2 POLR2A SMARCA4 PBX2 PIR46600 RPS6KA2-IT1
GH06F166435 0.8 Ensembl ENCODE 0.3 +29.6 29581 0.8 CTCF ZFHX2 GLIS1 BHLHE40 ZIC2 RAD21 EGR2 PIR46600 RPS6KA2-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS6KA2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS6KA2-IT1 Gene

Chromosome:
6
Start:
166,460,663 bp from pter
End:
166,465,383 bp from pter
Size:
4,721 bases
Orientation:
Minus strand

Genomic View for RPS6KA2-IT1 Gene

Genes around RPS6KA2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS6KA2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS6KA2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS6KA2-IT1 Gene

Proteins for RPS6KA2-IT1 Gene

Post-translational modifications for RPS6KA2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS6KA2-IT1 Gene

Domains & Families for RPS6KA2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS6KA2-IT1 Gene

Function for RPS6KA2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS6KA2-IT1 Gene

Localization for RPS6KA2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS6KA2-IT1 Gene

Pathways & Interactions for RPS6KA2-IT1 Gene

SuperPathways for RPS6KA2-IT1 Gene

No Data Available

Interacting Proteins for RPS6KA2-IT1 Gene

Gene Ontology (GO) - Biological Process for RPS6KA2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS6KA2-IT1 Gene

Transcripts for RPS6KA2-IT1 Gene

mRNA/cDNA for RPS6KA2-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS6KA2-IT1 Gene

RPS6KA2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPS6KA2-IT1 Gene

No ASD Table

Relevant External Links for RPS6KA2-IT1 Gene

GeneLoc Exon Structure for
RPS6KA2-IT1
ECgene alternative splicing isoforms for
RPS6KA2-IT1

Expression for RPS6KA2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS6KA2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for RPS6KA2-IT1 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.2).

SOURCE GeneReport for Unigene cluster for RPS6KA2-IT1 Gene:

Hs.675698
genes like me logo Genes that share expression patterns with RPS6KA2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS6KA2-IT1 Gene

Orthologs for RPS6KA2-IT1 Gene

Evolution for RPS6KA2-IT1 Gene

ENSEMBL:
Gene Tree for RPS6KA2-IT1 (if available)
TreeFam:
Gene Tree for RPS6KA2-IT1 (if available)

No data available for Orthologs for RPS6KA2-IT1 Gene

Paralogs for RPS6KA2-IT1 Gene

No data available for Paralogs for RPS6KA2-IT1 Gene

Variants for RPS6KA2-IT1 Gene

Sequence variations from dbSNP and Humsavar for RPS6KA2-IT1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1004699 -- 166,463,630(-) TTCCC(A/G)TTTTT intron-variant
rs1004700 -- 166,463,524(-) TTTCC(C/T)GTGAA intron-variant
rs10946165 -- 166,460,662(+) AGCAG(C/G)GCAGG intron-variant, downstream-variant-500B
rs10946166 -- 166,460,735(+) CCCCA(C/T)GGTGT intron-variant, nc-transcript-variant
rs10946167 -- 166,460,769(+) GTCCT(C/G)TCCTG intron-variant, nc-transcript-variant

Relevant External Links for RPS6KA2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS6KA2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS6KA2-IT1 Gene

Disorders for RPS6KA2-IT1 Gene

Relevant External Links for RPS6KA2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS6KA2-IT1

No disorders were found for RPS6KA2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS6KA2-IT1 Gene

Publications for RPS6KA2-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for RPS6KA2-IT1 Gene

Sources for RPS6KA2-IT1 Gene

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