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Aliases for RPS4Y1 Gene

Aliases for RPS4Y1 Gene

  • Ribosomal Protein S4, Y-Linked 1 2 3 5
  • Ribosomal Protein S4Y 2 3
  • RPS4Y 3 4
  • Ribosomal Protein S4, Y-Linked 2
  • 40S Ribosomal Protein S4, Y 3
  • 40S Ribosomal Protein S4 2
  • S4 3
  • Y 2

External Ids for RPS4Y1 Gene

Previous HGNC Symbols for RPS4Y1 Gene

  • RPS4Y

Previous GeneCards Identifiers for RPS4Y1 Gene

  • GC0YP002356
  • GC0YP002753
  • GC0YP002769
  • GC0YP002709
  • GC0YP000062

Summaries for RPS4Y1 Gene

Entrez Gene Summary for RPS4Y1 Gene

  • Cytoplasmic ribosomes, organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes ribosomal protein S4, a component of the 40S subunit. Ribosomal protein S4 is the only ribosomal protein known to be encoded by more than one gene, namely this gene and ribosomal protein S4, X-linked (RPS4X). The 2 isoforms encoded by these genes are not identical, but are functionally equivalent. Ribosomal protein S4 belongs to the S4E family of ribosomal proteins. It has been suggested that haploinsufficiency of the ribosomal protein S4 genes plays a role in Turner syndrome; however, this hypothesis is controversial. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPS4Y1 Gene

RPS4Y1 (Ribosomal Protein S4, Y-Linked 1) is a Protein Coding gene. Diseases associated with RPS4Y1 include turner syndrome. Among its related pathways are Gene Expression and Metabolism. GO annotations related to this gene include RNA binding and rRNA binding. An important paralog of this gene is RPS4Y2.

Gene Wiki entry for RPS4Y1 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS4Y1 Gene

Genomics for RPS4Y1 Gene

Regulatory Elements for RPS4Y1 Gene

Genomic Location for RPS4Y1 Gene

Chromosome:
Y
Start:
2,841,486 bp from pter
End:
2,932,000 bp from pter
Size:
90,515 bases
Orientation:
Plus strand

Genomic View for RPS4Y1 Gene

Genes around RPS4Y1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS4Y1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS4Y1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS4Y1 Gene

Proteins for RPS4Y1 Gene

  • Protein details for RPS4Y1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P22090-RS4Y1_HUMAN
    Recommended name:
    40S ribosomal protein S4, Y isoform 1
    Protein Accession:
    P22090
    Secondary Accessions:
    • A8K9V4

    Protein attributes for RPS4Y1 Gene

    Size:
    263 amino acids
    Molecular mass:
    29456 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPS4Y1 Gene

neXtProt entry for RPS4Y1 Gene

Proteomics data for RPS4Y1 Gene at MOPED

Post-translational modifications for RPS4Y1 Gene

  • Ubiquitination at Lys 134 and Lys 168
  • Modification sites at PhosphoSitePlus

Other Protein References for RPS4Y1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for RPS4Y1 Gene

Domains & Families for RPS4Y1 Gene

Suggested Antigen Peptide Sequences for RPS4Y1 Gene

Graphical View of Domain Structure for InterPro Entry

P22090

UniProtKB/Swiss-Prot:

RS4Y1_HUMAN :
  • Contains 1 S4 RNA-binding domain.
  • Belongs to the ribosomal protein S4e family.
Domain:
  • Contains 1 S4 RNA-binding domain.
Family:
  • Belongs to the ribosomal protein S4e family.
genes like me logo Genes that share domains with RPS4Y1: view

Function for RPS4Y1 Gene

genes like me logo Genes that share phenotypes with RPS4Y1: view

Human Phenotype Ontology for RPS4Y1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

miRNA Products

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for RPS4Y1 Gene

Localization for RPS4Y1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPS4Y1 Gene COMPARTMENTS Subcellular localization image for RPS4Y1 gene
Compartment Confidence
cytosol 5
nucleus 5
mitochondrion 2

Gene Ontology (GO) - Cellular Components for RPS4Y1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with RPS4Y1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPS4Y1 Gene

Pathways & Interactions for RPS4Y1 Gene

SuperPathways for RPS4Y1 Gene

Superpath Contained pathways
1 Viral mRNA Translation
.60
2 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
3 Influenza Viral RNA Transcription and Replication
4 Infectious disease
.48
5 rRNA processing
genes like me logo Genes that share pathways with RPS4Y1: view

Pathways by source for RPS4Y1 Gene

1 BioSystems pathway for RPS4Y1 Gene
1 KEGG pathway for RPS4Y1 Gene
1 GeneGo (Thomson Reuters) pathway for RPS4Y1 Gene

Interacting Proteins for RPS4Y1 Gene

Gene Ontology (GO) - Biological Process for RPS4Y1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006364 rRNA processing TAS --
GO:0006413 translational initiation TAS --
GO:0006415 translational termination TAS --
GO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS --
GO:0016032 viral process TAS --
genes like me logo Genes that share ontologies with RPS4Y1: view

No data available for SIGNOR curated interactions for RPS4Y1 Gene

Drugs & Compounds for RPS4Y1 Gene

No Compound Related Data Available

Transcripts for RPS4Y1 Gene

Unigene Clusters for RPS4Y1 Gene

Ribosomal protein S4, Y-linked 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS4Y1 Gene

No ASD Table

Relevant External Links for RPS4Y1 Gene

GeneLoc Exon Structure for
RPS4Y1
ECgene alternative splicing isoforms for
RPS4Y1

Expression for RPS4Y1 Gene

mRNA expression in normal human tissues for RPS4Y1 Gene

Protein differential expression in normal tissues from HIPED for RPS4Y1 Gene

This gene is overexpressed in Heart (21.4) and Testis (9.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPS4Y1 Gene



SOURCE GeneReport for Unigene cluster for RPS4Y1 Gene Hs.282376

genes like me logo Genes that share expression patterns with RPS4Y1: view

Protein tissue co-expression partners for RPS4Y1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPS4Y1 Gene

Orthologs for RPS4Y1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPS4Y1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPS4Y1 36
  • 100 (a)
OneToOne
RPS4Y1 35
  • 99.24 (n)
  • 99.62 (a)
cow
(Bos Taurus)
Mammalia LOC100850611 35
  • 79.72 (n)
  • 90.08 (a)
-- 36
  • 74 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 87 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Rps4x 16
Rps4y2 36
  • 89 (a)
ManyToMany
Rps4x 35
  • 80.99 (n)
  • 92.78 (a)
oppossum
(Monodelphis domestica)
Mammalia RPS4Y1 36
  • 93 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Rps4x 35
  • 80.35 (n)
  • 92.78 (a)
zebrafish
(Danio rerio)
Actinopterygii rps4x 36
  • 88 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta RpS4 36
  • 74 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rps-4 36
  • 63 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPS4A 36
  • 70 (a)
ManyToMany
RPS4B 36
  • 70 (a)
ManyToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.2819 35
rice
(Oryza sativa)
Liliopsida Os.12238 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5094 36
  • 75 (a)
OneToMany
Species with no ortholog for RPS4Y1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RPS4Y1 Gene

ENSEMBL:
Gene Tree for RPS4Y1 (if available)
TreeFam:
Gene Tree for RPS4Y1 (if available)

Paralogs for RPS4Y1 Gene

Paralogs for RPS4Y1 Gene

(2) SIMAP similar genes for RPS4Y1 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for RPS4Y1 Gene

genes like me logo Genes that share paralogs with RPS4Y1: view

Variants for RPS4Y1 Gene

Sequence variations from dbSNP and Humsavar for RPS4Y1 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type
rs36099506 -- 2,861,050(+) TCTTA(-/G)GCTCA intron-variant
rs370543164 -- 2,849,255(+) TTTCC(G/T)TGGCT intron-variant
rs745896311 -- 2,865,164(+) CCTGG(C/T)TCTTT reference, synonymous-codon
rs371147291 -- 2,852,998(+) AGTAG(A/T)GTGCA intron-variant
rs746142885 -- 2,850,560(+) GAGTT(-/CA)CAGTC intron-variant

Relevant External Links for RPS4Y1 Gene

HapMap Linkage Disequilibrium report
RPS4Y1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS4Y1 Gene

Disorders for RPS4Y1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RPS4Y1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
turner syndrome
  • bonnevie-ullrich syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RPS4Y1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS4Y1
genes like me logo Genes that share disorders with RPS4Y1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RPS4Y1 Gene

Publications for RPS4Y1 Gene

  1. Homologous ribosomal protein genes on the human X and Y chromosomes: escape from X inactivation and possible implications for Turner syndrome. (PMID: 2124517) Fisher E.M.C. … Page D.C. (Cell 1990) 3 4 23 67
  2. Relationship between the monosomy X phenotype and Y-linked ribosomal protein S4 (Rps4) in several species of mammals: a molecular evolutionary analysis of Rps4 homologs. (PMID: 8808278) Omoe K. … Endo A. (Genomics 1996) 3 23
  3. Structure and function of ribosomal protein S4 genes on the human and mouse sex chromosomes. (PMID: 8139551) Zinn A.R. … Page D.C. (Mol. Cell. Biol. 1994) 3 23
  4. Functional equivalence of human X- and Y-encoded isoforms of ribosomal protein S4 consistent with a role in Turner syndrome. (PMID: 8358435) Watanabe M. … Nishimoto T. (Nat. Genet. 1993) 3 23
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3

Products for RPS4Y1 Gene

Sources for RPS4Y1 Gene

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