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Aliases for RPS4XP17 Gene

Aliases for RPS4XP17 Gene

  • Ribosomal Protein S4X Pseudogene 17 2 3 5
  • Ribosomal Protein S4, X-Linked Pseudogene 3
  • RPS4X_7_1505 3
  • RPS4P17 3

External Ids for RPS4XP17 Gene

Previous HGNC Symbols for RPS4XP17 Gene

  • RPS4P17

Previous GeneCards Identifiers for RPS4XP17 Gene

  • GC17M000559

Summaries for RPS4XP17 Gene

GeneCards Summary for RPS4XP17 Gene

RPS4XP17 (Ribosomal Protein S4X Pseudogene 17) is a Pseudogene.

Additional gene information for RPS4XP17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS4XP17 Gene

Genomics for RPS4XP17 Gene

GeneHancer (GH) Regulatory Elements for RPS4XP17 Gene

Promoters and enhancers for RPS4XP17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I001484 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.7 -831.1 -831060 9.2 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF213 MYO1C PITPNA PRPF8 WDR81 SMYD4 GEMIN4 DPH1 YWHAE ENSG00000262228 INPP5K
GH17I000669 Enhancer 0.5 ENCODE 0.4 -11.5 -11500 0.2 JUND JUN CEBPB FOS VPS53 C17orf97 DOC2B RFLNB GC17M000676 RPS4XP17
GH17I000671 Enhancer 0.5 FANTOM5 0.4 -14.0 -13966 0.3 ZNF366 REST PRDM1 VPS53 C17orf97 DOC2B RFLNB GC17M000676 RPS4XP17
GH17I000673 Enhancer 0.5 ENCODE 0.4 -16.3 -16264 1.5 SP1 RFX1 POLR2A ZNF341 SIN3A BMI1 ZBTB17 VPS53 C17orf97 DOC2B RFLNB GEMIN4 ENSG00000263015 GC17M000676 RPS4XP17
GH17I000675 Enhancer 0.2 ENCODE 0.4 -18.8 -18788 1.8 VPS53 C17orf97 DOC2B RFLNB GEMIN4 ENSG00000263015 GC17M000676 RPS4XP17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS4XP17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS4XP17 Gene

Genomic Locations for RPS4XP17 Gene
chr17:656,732-657,596
(GRCh38/hg38)
Size:
865 bases
Orientation:
Minus strand
chr17:559,972-560,836
(GRCh37/hg19)

Genomic View for RPS4XP17 Gene

Genes around RPS4XP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS4XP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS4XP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS4XP17 Gene

Proteins for RPS4XP17 Gene

Post-translational modifications for RPS4XP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS4XP17 Gene

Domains & Families for RPS4XP17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS4XP17 Gene

Function for RPS4XP17 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS4XP17 Gene

Localization for RPS4XP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS4XP17 Gene

Pathways & Interactions for RPS4XP17 Gene

SuperPathways for RPS4XP17 Gene

No Data Available

Interacting Proteins for RPS4XP17 Gene

Gene Ontology (GO) - Biological Process for RPS4XP17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS4XP17 Gene

Drugs & Compounds for RPS4XP17 Gene

No Compound Related Data Available

Transcripts for RPS4XP17 Gene

mRNA/cDNA for RPS4XP17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS4XP17 Gene

No ASD Table

Relevant External Links for RPS4XP17 Gene

GeneLoc Exon Structure for
RPS4XP17
ECgene alternative splicing isoforms for
RPS4XP17

Expression for RPS4XP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS4XP17 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS4XP17 Gene:

RPS4XP17
genes like me logo Genes that share expression patterns with RPS4XP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS4XP17 Gene

Orthologs for RPS4XP17 Gene

Evolution for RPS4XP17 Gene

ENSEMBL:
Gene Tree for RPS4XP17 (if available)
TreeFam:
Gene Tree for RPS4XP17 (if available)

No data available for Orthologs for RPS4XP17 Gene

Paralogs for RPS4XP17 Gene

No data available for Paralogs for RPS4XP17 Gene

Variants for RPS4XP17 Gene

Additional Variant Information for RPS4XP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS4XP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS4XP17 Gene

Disorders for RPS4XP17 Gene

No disorders were found for RPS4XP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS4XP17 Gene

Publications for RPS4XP17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for RPS4XP17 Gene

Sources for RPS4XP17 Gene

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