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Aliases for RPS4XP16 Gene

Aliases for RPS4XP16 Gene

  • Ribosomal Protein S4X Pseudogene 16 2 3 5
  • Ribosomal Protein S4, X-Linked Pseudogene 3
  • RPS4X_8_1313 3
  • RPS4P16 3

External Ids for RPS4XP16 Gene

Previous HGNC Symbols for RPS4XP16 Gene

  • RPS4P16

Previous GeneCards Identifiers for RPS4XP16 Gene

  • GC13P052035

Summaries for RPS4XP16 Gene

GeneCards Summary for RPS4XP16 Gene

RPS4XP16 (Ribosomal Protein S4X Pseudogene 16) is a Pseudogene.

Additional gene information for RPS4XP16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS4XP16 Gene

Genomics for RPS4XP16 Gene

GeneHancer (GH) Regulatory Elements for RPS4XP16 Gene

Promoters and enhancers for RPS4XP16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I051450 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 560.7 -1.1 -1106 5.6 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 RPS4XP16 INTS6-AS1 INTS6 MRPS31P5 SERPINE3 DHRS12 ENSG00000231856 UTP14C ALG11
GH13I052193 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 40 +740.5 740496 2.7 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 MRPS31P5 ALG11 RPS4XP16 UTP14C SUGT1 CKAP2 INTS6 SERPINE3 INTS6-AS1 TPTE2P2
GH13I050908 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.9 -541.1 -541050 10 HDGF FOXA2 ARNT SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B E2F8 RNASEH2B RNASEH2B-AS1 DLEU7-AS1 DLEU7 KCNRG SERPINE3 TRIM13 RPS4XP16 INTS6 GC13M050919
GH13I050865 Enhancer 0.6 dbSUPER 10.1 -587.1 -587106 2.4 RNF2 ZNF493 ZNF514 ZNF155 PRDM6 ZNF366 SMARCA4 ZNF512 ZNF26 PRDM1 RNASEH2B RNASEH2B-AS1 SERPINE3 RPS4XP16 GC13P050857
GH13I051260 Enhancer 0.4 dbSUPER 12 -192.6 -192599 1.5 ZNF266 ATF2 GC13P051260 FAM124A SERPINE3 ALG11 RPS4XP16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS4XP16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS4XP16 Gene

Genomic Locations for RPS4XP16 Gene
chr13:51,454,164-51,461,380
(GRCh38/hg38)
Size:
7,217 bases
Orientation:
Plus strand
chr13:52,028,300-52,035,516
(GRCh37/hg19)

Genomic View for RPS4XP16 Gene

Genes around RPS4XP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS4XP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS4XP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS4XP16 Gene

Proteins for RPS4XP16 Gene

Post-translational modifications for RPS4XP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS4XP16 Gene

Domains & Families for RPS4XP16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS4XP16 Gene

Function for RPS4XP16 Gene

Phenotypes for RPS4XP16 Gene

GenomeRNAi human phenotypes for RPS4XP16:
genes like me logo Genes that share phenotypes with RPS4XP16: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS4XP16 Gene

Localization for RPS4XP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS4XP16 Gene

Pathways & Interactions for RPS4XP16 Gene

SuperPathways for RPS4XP16 Gene

No Data Available

Interacting Proteins for RPS4XP16 Gene

Gene Ontology (GO) - Biological Process for RPS4XP16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS4XP16 Gene

Drugs & Compounds for RPS4XP16 Gene

No Compound Related Data Available

Transcripts for RPS4XP16 Gene

mRNA/cDNA for RPS4XP16 Gene

(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS4XP16 Gene

No ASD Table

Relevant External Links for RPS4XP16 Gene

GeneLoc Exon Structure for
RPS4XP16
ECgene alternative splicing isoforms for
RPS4XP16

Expression for RPS4XP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS4XP16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS4XP16 Gene:

RPS4XP16
genes like me logo Genes that share expression patterns with RPS4XP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS4XP16 Gene

Orthologs for RPS4XP16 Gene

Evolution for RPS4XP16 Gene

ENSEMBL:
Gene Tree for RPS4XP16 (if available)
TreeFam:
Gene Tree for RPS4XP16 (if available)

No data available for Orthologs for RPS4XP16 Gene

Paralogs for RPS4XP16 Gene

No data available for Paralogs for RPS4XP16 Gene

Variants for RPS4XP16 Gene

Additional Variant Information for RPS4XP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS4XP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS4XP16 Gene

Disorders for RPS4XP16 Gene

Additional Disease Information for RPS4XP16

Genetic Association Database
(GAD)

No disorders were found for RPS4XP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS4XP16 Gene

Publications for RPS4XP16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for RPS4XP16 Gene

Sources for RPS4XP16 Gene

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