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Aliases for RPS3AP6 Gene

Aliases for RPS3AP6 Gene

  • Ribosomal Protein S3A Pseudogene 6 2 3 5
  • RPS3A_20_1440 3
  • RPS3A-Like 3

External Ids for RPS3AP6 Gene

Previous GeneCards Identifiers for RPS3AP6 Gene

  • GC15P057848
  • GC15P060061
  • GC15P036882

Summaries for RPS3AP6 Gene

GeneCards Summary for RPS3AP6 Gene

RPS3AP6 (Ribosomal Protein S3A Pseudogene 6) is a Pseudogene.

Additional gene information for RPS3AP6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP6 Gene

Genomics for RPS3AP6 Gene

Regulatory Elements for RPS3AP6 Gene

Enhancers for RPS3AP6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H060388 1.7 Ensembl ENCODE dbSUPER 21.3 +627.7 627653 15 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 NFYC MEF2D SSRP1 ICE2 RPS3AP6 RPL36AP44 RORA-AS1 ANXA2 GC15P060391
GH15H059290 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -469.3 -469336 17 HDGF FOXA2 SIN3A FEZF1 ZNF2 ZNF416 FOS DEK SP3 SP5 SLTM MYO1E PIGHP1 RPS3AP6 RNF111 MIR2116 BNIP2 GC15M059271 GC15M059344
GH15H059270 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -489.4 -489395 16 FOXA2 ATF1 MLX ARID4B SIN3A DMAP1 BRCA1 GTF3C2 SLC30A9 GLIS2 MYO1E SLTM FAM81A PIGHP1 RNF111 RPS3AP6 MIR2116 ENSG00000259250 GCNT3 GC15M059271
GH15H059553 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -212.9 -212862 3 FOXA2 ATF1 MLX TCF12 GTF3C2 FOS SP5 MXD4 NFYC PPARG SLTM PIGHP1 RPS3AP6 RNF111 GCNT3 RPL21P117 RNA5SP396 GC15M059576
GH15H059586 0.8 ENCODE 20.2 -180.8 -180753 1 JUN SALL2 CTBP1 ZNF316 GATA3 ZNF366 SCRT2 ZNF169 ZNF26 FOS ICE2 SLTM MINDY2 RPS3AP6 RNF111 GCNT3 GC15M059575
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS3AP6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS3AP6 Gene

Chromosome:
15
Start:
59,768,330 bp from pter
End:
59,769,188 bp from pter
Size:
859 bases
Orientation:
Plus strand

Genomic View for RPS3AP6 Gene

Genes around RPS3AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP6 Gene

Proteins for RPS3AP6 Gene

Post-translational modifications for RPS3AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP6 Gene

Domains & Families for RPS3AP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP6 Gene

Function for RPS3AP6 Gene

Phenotypes From GWAS Catalog for RPS3AP6 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS3AP6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP6 Gene

Localization for RPS3AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP6 Gene

Pathways & Interactions for RPS3AP6 Gene

SuperPathways for RPS3AP6 Gene

No Data Available

Interacting Proteins for RPS3AP6 Gene

Gene Ontology (GO) - Biological Process for RPS3AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP6 Gene

Drugs & Compounds for RPS3AP6 Gene

No Compound Related Data Available

Transcripts for RPS3AP6 Gene

mRNA/cDNA for RPS3AP6 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS3AP6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP6 Gene

No ASD Table

Relevant External Links for RPS3AP6 Gene

GeneLoc Exon Structure for
RPS3AP6
ECgene alternative splicing isoforms for
RPS3AP6

Expression for RPS3AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3AP6 Gene

Protein differential expression in normal tissues from HIPED for RPS3AP6 Gene

This gene is overexpressed in Saliva (37.3) and Heart (27.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS3AP6 Gene



Protein tissue co-expression partners for RPS3AP6 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP6 Gene:

RPS3AP6
genes like me logo Genes that share expression patterns with RPS3AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP6 Gene

Orthologs for RPS3AP6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPS3AP6 Gene

Organism Taxonomy Gene Similarity Type Details
soybean
(Glycine max)
eudicotyledons Gma.10737 33
Species where no ortholog for RPS3AP6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPS3AP6 Gene

ENSEMBL:
Gene Tree for RPS3AP6 (if available)
TreeFam:
Gene Tree for RPS3AP6 (if available)

Paralogs for RPS3AP6 Gene

No data available for Paralogs for RPS3AP6 Gene

Variants for RPS3AP6 Gene

Relevant External Links for RPS3AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP6 Gene

Disorders for RPS3AP6 Gene

No disorders were found for RPS3AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS3AP6 Gene

Publications for RPS3AP6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPS3AP6 Gene

Sources for RPS3AP6 Gene

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