Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS3AP51 Gene

Aliases for RPS3AP51 Gene

  • Ribosomal Protein S3a Pseudogene 51 2 3
  • RPS3A_23_1744 3
  • AC003071.1 5

External Ids for RPS3AP51 Gene

Previous GeneCards Identifiers for RPS3AP51 Gene

  • GC22U900528
  • GC22M030533

Summaries for RPS3AP51 Gene

GeneCards Summary for RPS3AP51 Gene

RPS3AP51 (Ribosomal Protein S3a Pseudogene 51) is a Pseudogene.

Additional gene information for RPS3AP51 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP51 Gene

Genomics for RPS3AP51 Gene

GeneHancer (GH) Regulatory Elements for RPS3AP51 Gene

Promoters and enhancers for RPS3AP51 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I030190 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -57.6 -57611 9.1 PKNOX1 FOXA2 ZFP64 SIN3A FEZF1 ZNF2 IRF4 ZNF213 FOS SP3 OSM MTMR3 HORMAD2-AS1 ASCC2 SELENOM SF3A1 SLC35E4 MTFP1 DUSP18 CCDC157
GH22I030108 Enhancer 1 Ensembl ENCODE 0.3 +29.0 28998 0.7 YBX1 ZNF2 RAD21 ZNF121 ARID2 ZNF366 ZNF143 ZNF654 ZNF362 NCOA1 ASCC2 HORMAD2-AS1 EWSR1 TUG1 RPL36P17 HORMAD2 RPS3AP51
GH22I030181 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -46.1 -46054 4.2 HDAC1 PKNOX1 ATF1 TCF12 ZNF766 RUNX3 KLF16 SMARCA4 IKZF1 HMBOX1 LIF ASCC2 HORMAD2-AS1 LOC105372988 LIF-AS1 MTMR3 DUSP18 OSM SF3A1 RPS3AP51
GH22I030160 Enhancer 0.8 Ensembl ENCODE 0.3 -22.3 -22336 0.9 FOXA2 MAFG CEBPB CEBPG JUND MAFF ZNF316 CEBPA NFE2 FOSL2 LIF LOC105372988 LIF-AS1 CASTOR1 RPS3AP51 HORMAD2
GH22I030115 Enhancer 0.6 ENCODE 0.3 +21.1 21096 1.7 SCRT1 SOX5 SOX13 FOXA2 CEBPG ZNF623 RAD21 ZNF335 JUND PRDM6 MTMR3 ASCC2 HORMAD2-AS1 RPL36P17 RPS3AP51 HORMAD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS3AP51 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS3AP51 Gene

Genomic Locations for RPS3AP51 Gene
chr22:30,136,630-30,137,681
(GRCh38/hg38)
Size:
1,052 bases
Orientation:
Minus strand
chr22:30,532,619-30,533,670
(GRCh37/hg19)

Genomic View for RPS3AP51 Gene

Genes around RPS3AP51 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP51 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP51 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP51 Gene

Proteins for RPS3AP51 Gene

Post-translational modifications for RPS3AP51 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP51 Gene

Domains & Families for RPS3AP51 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP51 Gene

Function for RPS3AP51 Gene

Phenotypes From GWAS Catalog for RPS3AP51 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP51 Gene

Localization for RPS3AP51 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP51 Gene

Pathways & Interactions for RPS3AP51 Gene

SuperPathways for RPS3AP51 Gene

No Data Available

Interacting Proteins for RPS3AP51 Gene

Gene Ontology (GO) - Biological Process for RPS3AP51 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP51 Gene

Drugs & Compounds for RPS3AP51 Gene

No Compound Related Data Available

Transcripts for RPS3AP51 Gene

mRNA/cDNA for RPS3AP51 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP51 Gene

No ASD Table

Relevant External Links for RPS3AP51 Gene

GeneLoc Exon Structure for
RPS3AP51
ECgene alternative splicing isoforms for
RPS3AP51

Expression for RPS3AP51 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3AP51 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP51 Gene:

RPS3AP51
genes like me logo Genes that share expression patterns with RPS3AP51: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP51 Gene

Orthologs for RPS3AP51 Gene

Evolution for RPS3AP51 Gene

ENSEMBL:
Gene Tree for RPS3AP51 (if available)
TreeFam:
Gene Tree for RPS3AP51 (if available)

No data available for Orthologs for RPS3AP51 Gene

Paralogs for RPS3AP51 Gene

No data available for Paralogs for RPS3AP51 Gene

Variants for RPS3AP51 Gene

Additional Variant Information for RPS3AP51 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP51

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP51 Gene

Disorders for RPS3AP51 Gene

Additional Disease Information for RPS3AP51

Genetic Association Database
(GAD)

No disorders were found for RPS3AP51 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP51 Gene

Publications for RPS3AP51 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes. (PMID: 21546767) Murea M … Freedman BI (American journal of nephrology 2011) 44 58
  3. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. (PMID: 21102463) Franke A … Parkes M (Nature genetics 2010) 44 58
  4. Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. (PMID: 19430480) Barrett JC … Type 1 Diabetes Genetics Consortium (Nature genetics 2009) 44 58

Products for RPS3AP51 Gene

Sources for RPS3AP51 Gene

Content
Loading form....