Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS3AP47 Gene

Aliases for RPS3AP47 Gene

  • Ribosomal Protein S3a Pseudogene 47 2 3
  • RPS3A_22_1428 3
  • AC068724.1 5

External Ids for RPS3AP47 Gene

Previous GeneCards Identifiers for RPS3AP47 Gene

  • GC15M041196
  • GC15M043408
  • GC15M043410

Summaries for RPS3AP47 Gene

GeneCards Summary for RPS3AP47 Gene

RPS3AP47 (Ribosomal Protein S3a Pseudogene 47) is a Pseudogene.

Additional gene information for RPS3AP47 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP47 Gene

Genomics for RPS3AP47 Gene

Regulatory Elements for RPS3AP47 Gene

Enhancers for RPS3AP47 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H043122 1 ENCODE 33 -6.5 -6549 1 PKNOX1 ATF1 BRCA1 YY1 GLIS2 ELK1 ATF7 SP3 MCM3 GTF2B LRRC57 RPS3AP47 GANC WDR76 LOC105370795 TMEM87A CDAN1 VPS39 SNAP23 MFAP1
GH15H043823 1.2 ENCODE 18.4 -709.5 -709512 5 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 SPG11 CTDSPL2 WDR76 ENSG00000249839 ELL3 ZSCAN29 ENSG00000259563 MFAP1 LCMT2 ADAL
GH15H042497 1.5 Ensembl ENCODE dbSUPER 10.4 +616.9 616910 4 HDGF PKNOX1 ARNT FEZF1 TCF12 GTF3C2 ATF7 FOS MEF2D SMARCA4 LRRC57 TUBGCP4 GANC MGA LCMT2 CDAN1 HAUS2 ENSG00000260814 LOC105370795 RPAP1
GH15H042270 1.4 ENCODE dbSUPER 10.4 +842.8 842765 5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 GANC LRRC57 LOC105370795 MGA RPAP1 CDAN1 VPS39 RPS3AP47 TMEM87A
GH15H042490 1.4 ENCODE dbSUPER 9.7 +625.2 625249 2 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 CBX5 LRRC57 TMEM87A GANC HAUS2 RPS3AP47 SNAP23 ENSG00000261684
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS3AP47 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS3AP47 Gene

Chromosome:
15
Start:
43,115,655 bp from pter
End:
43,116,517 bp from pter
Size:
863 bases
Orientation:
Minus strand

Genomic View for RPS3AP47 Gene

Genes around RPS3AP47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP47 Gene

Proteins for RPS3AP47 Gene

Post-translational modifications for RPS3AP47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP47 Gene

Domains & Families for RPS3AP47 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP47 Gene

Function for RPS3AP47 Gene

Phenotypes From GWAS Catalog for RPS3AP47 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS3AP47
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP47 Gene

Localization for RPS3AP47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP47 Gene

Pathways & Interactions for RPS3AP47 Gene

SuperPathways for RPS3AP47 Gene

No Data Available

Interacting Proteins for RPS3AP47 Gene

Gene Ontology (GO) - Biological Process for RPS3AP47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP47 Gene

Drugs & Compounds for RPS3AP47 Gene

No Compound Related Data Available

Transcripts for RPS3AP47 Gene

mRNA/cDNA for RPS3AP47 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS3AP47
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP47 Gene

No ASD Table

Relevant External Links for RPS3AP47 Gene

GeneLoc Exon Structure for
RPS3AP47
ECgene alternative splicing isoforms for
RPS3AP47

Expression for RPS3AP47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3AP47 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP47 Gene:

RPS3AP47
genes like me logo Genes that share expression patterns with RPS3AP47: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP47 Gene

Orthologs for RPS3AP47 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPS3AP47 Gene

Organism Taxonomy Gene Similarity Type Details
barley
(Hordeum vulgare)
Liliopsida Hv.5505 33
rice
(Oryza sativa)
Liliopsida Os.2249 33
wheat
(Triticum aestivum)
Liliopsida Ta.27448 33
Species where no ortholog for RPS3AP47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPS3AP47 Gene

ENSEMBL:
Gene Tree for RPS3AP47 (if available)
TreeFam:
Gene Tree for RPS3AP47 (if available)

Paralogs for RPS3AP47 Gene

No data available for Paralogs for RPS3AP47 Gene

Variants for RPS3AP47 Gene

Relevant External Links for RPS3AP47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP47 Gene

Disorders for RPS3AP47 Gene

No disorders were found for RPS3AP47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS3AP47 Gene

Publications for RPS3AP47 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPS3AP47 Gene

Sources for RPS3AP47 Gene

Content
Loading form....