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Aliases for RPS3AP21 Gene

Aliases for RPS3AP21 Gene

  • Ribosomal Protein S3a Pseudogene 21 2 3
  • RPS3A_7_600 3
  • AC010468.1 5

External Ids for RPS3AP21 Gene

Previous GeneCards Identifiers for RPS3AP21 Gene

  • GC05M110557
  • GC05M110560

Summaries for RPS3AP21 Gene

GeneCards Summary for RPS3AP21 Gene

RPS3AP21 (Ribosomal Protein S3a Pseudogene 21) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP21 Gene

Genomics for RPS3AP21 Gene

Regulatory Elements for RPS3AP21 Gene

Enhancers for RPS3AP21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F111753 1 ENCODE 40.5 -563.4 -563412 5.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 WDR36 RPS3AP21 SNORA13 STARD4-AS1 BCLAF1P1 RN7SKP57 LOC105379122
GH05F111091 0.6 ENCODE 30 +100.2 100213 2.6 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 WDR36 TSLP RPS3AP21 ENSG00000249318 ENSG00000253613 LOC100131280 NREP-AS1 ENSG00000248428 BCLAF1P1 STARD4-AS1
GH05F111529 0.9 FANTOM5 Ensembl ENCODE 12.4 -337.6 -337601 2.5 HDGF PKNOX1 ATF1 ARNT CREB3L1 CBX5 GATA2 NCOA1 MIER2 REST SNORA13 STARD4 RPS3AP21 WDR36 GC05M111479 ENSG00000251099
GH05F110737 1 ENCODE 12.4 +454.0 453950 2.3 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 RPS3AP21 WDR36 SLC25A46 TMEM232 GC05P110816
GH05F112160 0.2 ENCODE 12.2 -968.5 -968514 2.8 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 EPB41L4A-AS1 RPS3AP21 ENSG00000272389 EPB41L4A PIR48450 SNORA13
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS3AP21 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS3AP21 Gene

Chromosome:
5
Start:
111,192,185 bp from pter
End:
111,193,067 bp from pter
Size:
883 bases
Orientation:
Minus strand

Genomic View for RPS3AP21 Gene

Genes around RPS3AP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP21 Gene

Proteins for RPS3AP21 Gene

Post-translational modifications for RPS3AP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP21 Gene

Domains & Families for RPS3AP21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP21 Gene

Function for RPS3AP21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP21 Gene

Localization for RPS3AP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS3AP21 Gene

Pathways & Interactions for RPS3AP21 Gene

SuperPathways for RPS3AP21 Gene

No Data Available

Interacting Proteins for RPS3AP21 Gene

Gene Ontology (GO) - Biological Process for RPS3AP21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP21 Gene

Transcripts for RPS3AP21 Gene

mRNA/cDNA for RPS3AP21 Gene

(12) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP21 Gene

No ASD Table

Relevant External Links for RPS3AP21 Gene

GeneLoc Exon Structure for
RPS3AP21
ECgene alternative splicing isoforms for
RPS3AP21

Expression for RPS3AP21 Gene

mRNA expression in normal human tissues for RPS3AP21 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS3AP21 Gene



NURSA nuclear receptor signaling pathways regulating expression of RPS3AP21 Gene:

RPS3AP21
genes like me logo Genes that share expression patterns with RPS3AP21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS3AP21 Gene

Orthologs for RPS3AP21 Gene

Evolution for RPS3AP21 Gene

ENSEMBL:
Gene Tree for RPS3AP21 (if available)
TreeFam:
Gene Tree for RPS3AP21 (if available)

No data available for Orthologs for RPS3AP21 Gene

Paralogs for RPS3AP21 Gene

No data available for Paralogs for RPS3AP21 Gene

Variants for RPS3AP21 Gene

Relevant External Links for RPS3AP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP21 Gene

Disorders for RPS3AP21 Gene

Relevant External Links for RPS3AP21

Genetic Association Database (GAD)
RPS3AP21

No disorders were found for RPS3AP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP21 Gene

Publications for RPS3AP21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study. (PMID: 17903306) Newton-Cheh C. … Larson M.G. (BMC Med. Genet. 2007) 46 64

Products for RPS3AP21 Gene

Sources for RPS3AP21 Gene

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