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Aliases for RPS3AP20 Gene

Aliases for RPS3AP20 Gene

  • Ribosomal Protein S3a Pseudogene 20 2 3
  • CTC-451P13.1 5
  • RPS3A_6_581 3

External Ids for RPS3AP20 Gene

Previous GeneCards Identifiers for RPS3AP20 Gene

  • GC05M078617
  • GC05M078619

Summaries for RPS3AP20 Gene

GeneCards Summary for RPS3AP20 Gene

RPS3AP20 (Ribosomal Protein S3a Pseudogene 20) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP20 Gene

Genomics for RPS3AP20 Gene

Regulatory Elements for RPS3AP20 Gene

Enhancers for RPS3AP20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F078755 1.4 FANTOM5 Ensembl ENCODE 44.1 +527.3 527346 3.6 HDGF PKNOX1 ZFP64 ZNF493 ZNF121 CBX5 FOS ZNF202 JUNB REST PAPD4 RPS3AP20 JMY ENSG00000254310 LHFPL2
GH05F079511 0.2 ENCODE 21.9 -228.7 -228659 3.6 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 RPS3AP20 PAPD4 JMY GC05P079511 HOMER1
GH05F080210 1.3 FANTOM5 Ensembl ENCODE 21.9 -930.2 -930155 9.4 HDGF PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 RPS3AP20 SERINC5 PAPD4 JMY MSH3 ENSG00000251675 CTD-2201I18.1 THBS4 DHFR GC05P080147
GH05F078637 0.7 Ensembl ENCODE 18.1 +644.7 644709 5.7 HDGF PKNOX1 ATF1 WRNIP1 ZFP64 ARID4B SIN3A GLI4 FEZF1 ZNF2 RPS3AP20 PAPD4 LHFPL2 GC05M078630 HMGB1P21
GH05F079611 0.2 ENCODE 12.9 -328.0 -327966 3.5 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF766 PAPD4 JMY KRT18P45 LOC644936 RPL39P20 SPZ1 RPS3AP20 RBMX2P5 GC05M079620
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS3AP20 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS3AP20 Gene

Chromosome:
5
Start:
79,284,088 bp from pter
End:
79,284,946 bp from pter
Size:
859 bases
Orientation:
Minus strand

Genomic View for RPS3AP20 Gene

Genes around RPS3AP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP20 Gene

Proteins for RPS3AP20 Gene

Post-translational modifications for RPS3AP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP20 Gene

Domains & Families for RPS3AP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP20 Gene

Function for RPS3AP20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP20 Gene

Localization for RPS3AP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS3AP20 Gene

Pathways & Interactions for RPS3AP20 Gene

SuperPathways for RPS3AP20 Gene

No Data Available

Interacting Proteins for RPS3AP20 Gene

Gene Ontology (GO) - Biological Process for RPS3AP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP20 Gene

Transcripts for RPS3AP20 Gene

mRNA/cDNA for RPS3AP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP20 Gene

No ASD Table

Relevant External Links for RPS3AP20 Gene

GeneLoc Exon Structure for
RPS3AP20
ECgene alternative splicing isoforms for
RPS3AP20

Expression for RPS3AP20 Gene

mRNA expression in normal human tissues for RPS3AP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP20 Gene:

RPS3AP20
genes like me logo Genes that share expression patterns with RPS3AP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS3AP20 Gene

Orthologs for RPS3AP20 Gene

Evolution for RPS3AP20 Gene

ENSEMBL:
Gene Tree for RPS3AP20 (if available)
TreeFam:
Gene Tree for RPS3AP20 (if available)

No data available for Orthologs for RPS3AP20 Gene

Paralogs for RPS3AP20 Gene

No data available for Paralogs for RPS3AP20 Gene

Variants for RPS3AP20 Gene

Relevant External Links for RPS3AP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP20 Gene

Disorders for RPS3AP20 Gene

Relevant External Links for RPS3AP20

Genetic Association Database (GAD)
RPS3AP20

No disorders were found for RPS3AP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP20 Gene

Publications for RPS3AP20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS3AP20 Gene

Sources for RPS3AP20 Gene

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