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Aliases for RPS3AP20 Gene

Aliases for RPS3AP20 Gene

  • Ribosomal Protein S3a Pseudogene 20 2 3
  • RPS3A_6_581 3
  • AC020898.1 5

External Ids for RPS3AP20 Gene

Previous GeneCards Identifiers for RPS3AP20 Gene

  • GC05M078617
  • GC05M078619

Summaries for RPS3AP20 Gene

GeneCards Summary for RPS3AP20 Gene

RPS3AP20 (Ribosomal Protein S3a Pseudogene 20) is a Pseudogene.

Additional gene information for RPS3AP20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP20 Gene

Genomics for RPS3AP20 Gene

GeneHancer (GH) Regulatory Elements for RPS3AP20 Gene

Promoters and enhancers for RPS3AP20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I080251 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 22 -970.2 -970243 7.7 HDGF PKNOX1 SMAD1 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 E2F8 GC05P080257 SERINC5 PAPD4 RPS3AP20 MTX3 ENSG00000251675 CTD-2201I18.1 THBS4 DHFR GC05P080258
GH05I078756 Enhancer 1.4 FANTOM5 Ensembl ENCODE 26.6 +526.9 526914 2.2 HDGF PKNOX1 FOXA2 IRF4 ZNF121 ZNF213 ZNF207 ATF7 FOS RUNX3 PAPD4 RPS3AP20 JMY ENSG00000254310 LHFPL2
GH05I079611 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.2 -328.0 -327965 3.5 CLOCK FEZF1 DMAP1 YY1 ZNF213 E2F8 SP3 ZFP41 MEF2D ZNF610 PAPD4 RPS3AP20 MTX3 CRSP8P GC05M079620
GH05I078359 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12 +924.3 924250 3.3 ARNT ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 SCAMP1 SCAMP1-AS1 PIR62844 JMY RPL7P23 RPS3AP20 DMGDH PIR51536
GH05I078293 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 10.3 +990.2 990178 2.9 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B NEUROD1 SIN3A AP3B1 JMY RPS3AP20 RPL7P23 ENSG00000251605
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS3AP20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS3AP20 Gene

Genomic Locations for RPS3AP20 Gene
chr5:79,284,088-79,284,946
(GRCh38/hg38)
Size:
859 bases
Orientation:
Minus strand
chr5:78,579,911-78,580,769
(GRCh37/hg19)

Genomic View for RPS3AP20 Gene

Genes around RPS3AP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP20 Gene

Proteins for RPS3AP20 Gene

Post-translational modifications for RPS3AP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP20 Gene

Domains & Families for RPS3AP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP20 Gene

Function for RPS3AP20 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP20 Gene

Localization for RPS3AP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP20 Gene

Pathways & Interactions for RPS3AP20 Gene

SuperPathways for RPS3AP20 Gene

No Data Available

Interacting Proteins for RPS3AP20 Gene

Gene Ontology (GO) - Biological Process for RPS3AP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP20 Gene

Drugs & Compounds for RPS3AP20 Gene

No Compound Related Data Available

Transcripts for RPS3AP20 Gene

mRNA/cDNA for RPS3AP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP20 Gene

No ASD Table

Relevant External Links for RPS3AP20 Gene

GeneLoc Exon Structure for
RPS3AP20
ECgene alternative splicing isoforms for
RPS3AP20

Expression for RPS3AP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3AP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP20 Gene:

RPS3AP20
genes like me logo Genes that share expression patterns with RPS3AP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP20 Gene

Orthologs for RPS3AP20 Gene

Evolution for RPS3AP20 Gene

ENSEMBL:
Gene Tree for RPS3AP20 (if available)
TreeFam:
Gene Tree for RPS3AP20 (if available)

No data available for Orthologs for RPS3AP20 Gene

Paralogs for RPS3AP20 Gene

No data available for Paralogs for RPS3AP20 Gene

Variants for RPS3AP20 Gene

Additional Variant Information for RPS3AP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP20 Gene

Disorders for RPS3AP20 Gene

Additional Disease Information for RPS3AP20

Genetic Association Database
(GAD)

No disorders were found for RPS3AP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP20 Gene

Publications for RPS3AP20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS3AP20 Gene

Sources for RPS3AP20 Gene

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