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Aliases for RPS3AP2 Gene

Subcategory (RNA class) for RPS3AP2 Gene

lncRNA

Aliases for RPS3AP2 Gene

  • Ribosomal Protein S3A Pseudogene 2 2 3 5
  • RPS3A_21_1466 3

External Ids for RPS3AP2 Gene

ORGUL Members for RPS3AP2 Gene

Previous GeneCards Identifiers for RPS3AP2 Gene

  • GC16U990181
  • GC16P001471
  • GC16P001527
  • GC16P001453

Summaries for RPS3AP2 Gene

GeneCards Summary for RPS3AP2 Gene

RPS3AP2 (Ribosomal Protein S3A Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP2 Gene

Genomics for RPS3AP2 Gene

Regulatory Elements for RPS3AP2 Gene

Enhancers for RPS3AP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F001559 1.1 ENCODE 11.1 +82.6 82601 2.7 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS SP3 TMEM204 ENSG00000226890 IFT140 HN1L LOC105371038 ENSG00000200059 ENSG00000261240 PRSS29P SNHG19 ENSG00000262528
GH16F001677 1.1 ENCODE 10.1 +201.8 201787 4.3 HDGF ATF1 PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 YY1 GLIS2 ZNF143 FAHD1 HN1L TELO2 MAPK8IP3 PTX4 CLCN7 RPS3AP2 GNPTG TMEM204 ERVK13-1
GH16F001744 1 Ensembl ENCODE 10.4 +268.4 268406 2.8 JUN ZNF48 ZNF664 ZNF316 POLR2A SMC3 RCOR1 MAFK MAZ STAT1 HAGH MAPK8IP3 HN1L RPS3AP2 CLCN7 ENSG00000261207 GC16P001748 MIR3177
GH16F001511 0.6 Ensembl 12.3 +34.6 34598 1.5 CTCF L3MBTL2 POLR2A MAX ZBTB33 SUPT5H NR2F2 TELO2 IFT140 PTX4 RPS3AP2 CLCN7 CCDC154 ENSG00000260646 GC16P001504
GH16F001631 0.6 ENCODE 10.9 +154.4 154441 1.4 CEBPA HLF CEBPB ZBTB33 CEBPG HN1L MAPK8IP3 IFT140 CLCN7 RPS3AP2 TMEM204 TELO2 ENSG00000261732 GC16P001635
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS3AP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS3AP2 Gene

Chromosome:
16
Start:
1,477,830 bp from pter
End:
1,478,590 bp from pter
Size:
761 bases
Orientation:
Plus strand

Genomic View for RPS3AP2 Gene

Genes around RPS3AP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP2 Gene

Proteins for RPS3AP2 Gene

Post-translational modifications for RPS3AP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP2 Gene

Domains & Families for RPS3AP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP2 Gene

Function for RPS3AP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP2 Gene

Localization for RPS3AP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS3AP2 Gene

Pathways & Interactions for RPS3AP2 Gene

SuperPathways for RPS3AP2 Gene

No Data Available

Interacting Proteins for RPS3AP2 Gene

Gene Ontology (GO) - Biological Process for RPS3AP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP2 Gene

Transcripts for RPS3AP2 Gene

mRNA/cDNA for RPS3AP2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP2 Gene

No ASD Table

Relevant External Links for RPS3AP2 Gene

GeneLoc Exon Structure for
RPS3AP2
ECgene alternative splicing isoforms for
RPS3AP2

Expression for RPS3AP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS3AP2 Gene

mRNA differential expression in normal tissues according to GTEx for RPS3AP2 Gene

This gene is overexpressed in Testis (x12.6).

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP2 Gene:

RPS3AP2
genes like me logo Genes that share expression patterns with RPS3AP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS3AP2 Gene

Orthologs for RPS3AP2 Gene

Evolution for RPS3AP2 Gene

ENSEMBL:
Gene Tree for RPS3AP2 (if available)
TreeFam:
Gene Tree for RPS3AP2 (if available)

No data available for Orthologs for RPS3AP2 Gene

Paralogs for RPS3AP2 Gene

No data available for Paralogs for RPS3AP2 Gene

Variants for RPS3AP2 Gene

Relevant External Links for RPS3AP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP2 Gene

Disorders for RPS3AP2 Gene

No disorders were found for RPS3AP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS3AP2 Gene

Publications for RPS3AP2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS3AP2 Gene

Sources for RPS3AP2 Gene

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