Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS2P6 Gene

Aliases for RPS2P6 Gene

  • Ribosomal Protein S2 Pseudogene 6 2 3 5
  • RPS2_22_1612 3

External Ids for RPS2P6 Gene

Previous GeneCards Identifiers for RPS2P6 Gene

  • GC18P066249
  • GC18P068098

Summaries for RPS2P6 Gene

GeneCards Summary for RPS2P6 Gene

RPS2P6 (Ribosomal Protein S2 Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS2P6 Gene

Genomics for RPS2P6 Gene

Regulatory Elements for RPS2P6 Gene

Enhancers for RPS2P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F070204 1.1 ENCODE 16.2 -224.6 -224641 2.3 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 LOC105372179 LINC01910 LARP7P3 RPS2P6 LOC105372178 SOCS6 LOC105372180 GC18P070003
GH18F070428 0.9 Ensembl ENCODE 0.8 -1.4 -1391 1.6 CEBPG RAD21 IRF9 ZNF366 TRIM24 GATAD2A L3MBTL2 HLF BHLHE40 JUNB RTTN SOCS6 RPS2P6 LARP7P3
GH18F070429 1.2 Ensembl ENCODE 0.8 +0.7 748 2.0 ATF1 MLX ARID4B SIN3A DMAP1 BRCA1 PPARG KAT8 SSRP1 ATF4 RTTN SOCS6 RPS2P6 LOC105376872
GH18F070432 1.1 Ensembl ENCODE 0.8 +3.5 3491 1.9 ARID4B THRB ZNF48 RAD21 RARA RFX5 ZNF143 MIXL1 THAP11 ZNF654 RTTN LARP7P3 RPS2P6 LOC105376872
GH18F070418 1 FANTOM5 Ensembl ENCODE 0.4 -7.9 -7886 8.2 PKNOX1 FEZF1 YY1 FOS JUNB PPARG KAT8 ATF4 SMARCA4 ETV4 SOCS6 RTTN LARP7P3 CD226 RPS2P6
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS2P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS2P6 Gene

Chromosome:
18
Start:
70,430,210 bp from pter
End:
70,431,161 bp from pter
Size:
952 bases
Orientation:
Plus strand

Genomic View for RPS2P6 Gene

Genes around RPS2P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P6 Gene

Proteins for RPS2P6 Gene

Post-translational modifications for RPS2P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P6 Gene

Domains & Families for RPS2P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS2P6 Gene

Function for RPS2P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P6 Gene

Localization for RPS2P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS2P6 Gene

Pathways & Interactions for RPS2P6 Gene

SuperPathways for RPS2P6 Gene

No Data Available

Interacting Proteins for RPS2P6 Gene

Gene Ontology (GO) - Biological Process for RPS2P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS2P6 Gene

Transcripts for RPS2P6 Gene

mRNA/cDNA for RPS2P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P6 Gene

No ASD Table

Relevant External Links for RPS2P6 Gene

GeneLoc Exon Structure for
RPS2P6
ECgene alternative splicing isoforms for
RPS2P6

Expression for RPS2P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS2P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS2P6 Gene

This gene is overexpressed in Testis (x50.4).

Protein differential expression in normal tissues from HIPED for RPS2P6 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS2P6 Gene



Protein tissue co-expression partners for RPS2P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS2P6 Gene:

RPS2P6
genes like me logo Genes that share expression patterns with RPS2P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RPS2P6 Gene

Orthologs for RPS2P6 Gene

Evolution for RPS2P6 Gene

ENSEMBL:
Gene Tree for RPS2P6 (if available)
TreeFam:
Gene Tree for RPS2P6 (if available)

No data available for Orthologs for RPS2P6 Gene

Paralogs for RPS2P6 Gene

No data available for Paralogs for RPS2P6 Gene

Variants for RPS2P6 Gene

Relevant External Links for RPS2P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P6 Gene

Disorders for RPS2P6 Gene

Relevant External Links for RPS2P6

Genetic Association Database (GAD)
RPS2P6

No disorders were found for RPS2P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS2P6 Gene

Publications for RPS2P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins D.E. … van den Oord E.J. (Mol. Psychiatry 2011) 46 64
  3. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini S.E. … Oksenberg J.R. (Hum. Mol. Genet. 2009) 46 64
  4. Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels. (PMID: 19084217) Benyamin B. … Visscher P.M. (Am. J. Hum. Genet. 2009) 46 64
  5. A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24. (PMID: 19656524) Grant S.F. … Hakonarson H. (J. Pediatr. 2009) 46 64

Products for RPS2P6 Gene

Sources for RPS2P6 Gene

Content
Loading form....