Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS2P6 Gene

Aliases for RPS2P6 Gene

  • Ribosomal Protein S2 Pseudogene 6 2 3
  • RPS2_22_1612 3

External Ids for RPS2P6 Gene

Previous GeneCards Identifiers for RPS2P6 Gene

  • GC18P066249
  • GC18P068098

Summaries for RPS2P6 Gene

GeneCards Summary for RPS2P6 Gene

RPS2P6 (Ribosomal Protein S2 Pseudogene 6) is a Pseudogene.

Additional gene information for RPS2P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS2P6 Gene

Genomics for RPS2P6 Gene

GeneHancer (GH) Regulatory Elements for RPS2P6 Gene

Promoters and enhancers for RPS2P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I070429 Enhancer 1.1 ENCODE dbSUPER 550.8 +0.7 748 2 FOXA2 MLX ARID4B SIN3A DMAP1 BRCA1 ETS1 ATF7 RXRA REST RPS2P6 RTTN SOCS6 LOC105376872
GH18I070428 Enhancer 0.7 ENCODE 550.8 -1.4 -1390 1.6 GTF2E2 MAX CEBPG BATF IRF4 RAD21 IRF9 TRIM24 RUNX3 GATAD2A RPS2P6 RTTN SOCS6 LARP7P3
GH18I070432 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 +3.5 3490 1.9 ARID4B IRF4 THRB ZNF48 RAD21 RARA RFX5 ZNF143 BCLAF1 RUNX3 RTTN LARP7P3 RPS2P6 LOC105376872
GH18I070418 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.9 -7885 8.2 PKNOX1 FOXA2 FEZF1 IRF4 ETS1 YY1 TCF12 ZNF766 FOS RUNX3 SOCS6 RTTN LARP7P3 CD226 RPS2P6
GH18I070464 Enhancer 1 Ensembl ENCODE 0.3 +34.7 34730 1.2 PKNOX1 SMAD1 NFIB ZNF529 MZF1 ZNF195 FEZF1 RAD21 YY1 ZNF335 LINC01909 RTTN SOCS6 LOC105376872 RPS2P6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS2P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS2P6 Gene

Genomic Locations for RPS2P6 Gene
chr18:70,430,210-70,431,161
(GRCh38/hg38)
Size:
952 bases
Orientation:
Plus strand
chr18:68,096,396-68,098,397
(GRCh37/hg19)

Genomic View for RPS2P6 Gene

Genes around RPS2P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P6 Gene

Proteins for RPS2P6 Gene

Post-translational modifications for RPS2P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P6 Gene

Domains & Families for RPS2P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS2P6 Gene

Function for RPS2P6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P6 Gene

Localization for RPS2P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P6 Gene

Pathways & Interactions for RPS2P6 Gene

SuperPathways for RPS2P6 Gene

No Data Available

Interacting Proteins for RPS2P6 Gene

Gene Ontology (GO) - Biological Process for RPS2P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS2P6 Gene

Drugs & Compounds for RPS2P6 Gene

No Compound Related Data Available

Transcripts for RPS2P6 Gene

mRNA/cDNA for RPS2P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P6 Gene

No ASD Table

Relevant External Links for RPS2P6 Gene

GeneLoc Exon Structure for
RPS2P6
ECgene alternative splicing isoforms for
RPS2P6

Expression for RPS2P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS2P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS2P6 Gene

This gene is overexpressed in Testis (x50.4).

Protein differential expression in normal tissues from HIPED for RPS2P6 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS2P6 Gene



Protein tissue co-expression partners for RPS2P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS2P6 Gene:

RPS2P6
genes like me logo Genes that share expression patterns with RPS2P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P6 Gene

Orthologs for RPS2P6 Gene

Evolution for RPS2P6 Gene

ENSEMBL:
Gene Tree for RPS2P6 (if available)
TreeFam:
Gene Tree for RPS2P6 (if available)

No data available for Orthologs for RPS2P6 Gene

Paralogs for RPS2P6 Gene

No data available for Paralogs for RPS2P6 Gene

Variants for RPS2P6 Gene

Additional Variant Information for RPS2P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P6 Gene

Disorders for RPS2P6 Gene

Additional Disease Information for RPS2P6

Genetic Association Database
(GAD)

No disorders were found for RPS2P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS2P6 Gene

Publications for RPS2P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 44 58
  3. A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24. (PMID: 19656524) Grant SF … Hakonarson H (The Journal of pediatrics 2009) 44 58
  4. Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels. (PMID: 19084217) Benyamin B … Visscher PM (American journal of human genetics 2009) 44 58
  5. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini SE … Oksenberg JR (Human molecular genetics 2009) 44 58

Products for RPS2P6 Gene

Sources for RPS2P6 Gene

Content
Loading form....