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Aliases for RPS2P40 Gene

Aliases for RPS2P40 Gene

  • Ribosomal Protein S2 Pseudogene 40 2 3
  • RP11-452G18.2 5
  • RPS2_17_1125 3
  • HCG1992539 3

External Ids for RPS2P40 Gene

Previous GeneCards Identifiers for RPS2P40 Gene

  • GC11P017207
  • GC11P017209

Summaries for RPS2P40 Gene

GeneCards Summary for RPS2P40 Gene

RPS2P40 (Ribosomal Protein S2 Pseudogene 40) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS2P40 Gene

Genomics for RPS2P40 Gene

Regulatory Elements for RPS2P40 Gene

Enhancers for RPS2P40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F017206 1.1 FANTOM5 ENCODE 4.9 -19.6 -19613 4.5 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 CBX5 SP3 NFYC OR7E14P RPS13 SNORD14B SNORD14A RPS2P40 GC11P017211 NUCB2
GH11F017229 0.9 Ensembl ENCODE 0.8 +2.2 2206 1.5 HDGF PKNOX1 BMI1 DMAP1 RAD21 CBX5 ETV6 CREM ZNF654 CEBPB OR7E14P RPS2P40 PIR46564 GC11M017255
GH11F017222 0.2 Ensembl 0.4 -6.1 -6051 0.4 ZBED1 EED IKZF1 HMBOX1 ZNF384 ZBTB40 RPS2P40 GC11P017211
GH11F017238 0.4 ENCODE 0.4 +10.4 10378 0.2 ATF1 PKNOX1 KLF1 SIN3A CEBPG GATA3 ZFHX2 CTBP1 ELK1 RCOR1 OR7E14P ABCC8 RPS2P40 GC11M017255 PIR46564
GH11F017239 0.2 ENCODE 0.4 +11.2 11218 0.2 ZNF316 GATA3 PKNOX1 ABCC8 PIR46564 GC11M017255 RPS2P40
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS2P40 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS2P40 Gene

Chromosome:
11
Start:
17,228,251 bp from pter
End:
17,229,198 bp from pter
Size:
948 bases
Orientation:
Plus strand

Genomic View for RPS2P40 Gene

Genes around RPS2P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P40 Gene

Proteins for RPS2P40 Gene

Post-translational modifications for RPS2P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P40 Gene

Domains & Families for RPS2P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS2P40 Gene

Function for RPS2P40 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P40 Gene

Localization for RPS2P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS2P40 Gene

Pathways & Interactions for RPS2P40 Gene

SuperPathways for RPS2P40 Gene

No Data Available

Interacting Proteins for RPS2P40 Gene

Gene Ontology (GO) - Biological Process for RPS2P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS2P40 Gene

Transcripts for RPS2P40 Gene

mRNA/cDNA for RPS2P40 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P40 Gene

No ASD Table

Relevant External Links for RPS2P40 Gene

GeneLoc Exon Structure for
RPS2P40
ECgene alternative splicing isoforms for
RPS2P40

Expression for RPS2P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS2P40 Gene

mRNA differential expression in normal tissues according to GTEx for RPS2P40 Gene

This gene is overexpressed in Lung (x4.7) and Testis (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of RPS2P40 Gene:

RPS2P40
genes like me logo Genes that share expression patterns with RPS2P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS2P40 Gene

Orthologs for RPS2P40 Gene

Evolution for RPS2P40 Gene

ENSEMBL:
Gene Tree for RPS2P40 (if available)
TreeFam:
Gene Tree for RPS2P40 (if available)

No data available for Orthologs for RPS2P40 Gene

Paralogs for RPS2P40 Gene

No data available for Paralogs for RPS2P40 Gene

Variants for RPS2P40 Gene

Relevant External Links for RPS2P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P40 Gene

Disorders for RPS2P40 Gene

No disorders were found for RPS2P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS2P40 Gene

Publications for RPS2P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation. (PMID: 26362536) Le Sage V. … Mouland A.J. (Virol. J. 2015) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for RPS2P40 Gene

Sources for RPS2P40 Gene

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