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Aliases for RPS28P5 Gene

Aliases for RPS28P5 Gene

  • Ribosomal Protein S28 Pseudogene 5 2 3
  • RPS28_3_243 3
  • AC007387.2 5

External Ids for RPS28P5 Gene

Previous GeneCards Identifiers for RPS28P5 Gene

  • GC02U901659
  • GC02M074981

Summaries for RPS28P5 Gene

GeneCards Summary for RPS28P5 Gene

RPS28P5 (Ribosomal Protein S28 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS28P5 Gene

Genomics for RPS28P5 Gene

Regulatory Elements for RPS28P5 Gene

Enhancers for RPS28P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G074739 1.5 FANTOM5 Ensembl ENCODE 0.4 +13.8 13803 3.6 PKNOX1 ATF1 ARNT MLX ARID4B SIN3A DMAP1 BRCA1 ZNF48 GTF3C2 MOGS SEMA4F DUSP11 PCGF1 WBP1 ENSG00000273245 DGUOK-AS1 CCDC142 M1AP TLX2
GH02G074764 1.3 Ensembl ENCODE 0.4 -10.0 -9983 1.2 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 TCF12 GATA2 SP5 ZHX2 SEMA4F M1AP RPS28P5 LOC102724482
GH02G074745 1.2 Ensembl ENCODE 0.4 +7.8 7775 2.1 ELF3 FOXA2 ARID4B DMAP1 RAD21 ZNF48 RARA SLC30A9 FOS MIXL1 SEMA4F M1AP TACR1 RPS28P5 LOC102724497
GH02G074714 1.3 Ensembl ENCODE 0.3 +39.4 39412 1.6 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 SLC30A9 GLIS2 HK2 SEMA4F M1AP INO80B LBX2-AS1 LOC102724497 RPS28P5
GH02G074755 0.5 FANTOM5 0.7 -0.8 -794 0.2 CTCF REST RAD21 SEMA4F M1AP RPS28P5 LOC102724482
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS28P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS28P5 Gene

Chromosome:
2
Start:
74,754,670 bp from pter
End:
74,754,819 bp from pter
Size:
150 bases
Orientation:
Minus strand

Genomic View for RPS28P5 Gene

Genes around RPS28P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS28P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS28P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS28P5 Gene

Proteins for RPS28P5 Gene

Post-translational modifications for RPS28P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS28P5 Gene

Domains & Families for RPS28P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS28P5 Gene

Function for RPS28P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS28P5 Gene

Localization for RPS28P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS28P5 Gene

Pathways & Interactions for RPS28P5 Gene

SuperPathways for RPS28P5 Gene

No Data Available

Interacting Proteins for RPS28P5 Gene

Gene Ontology (GO) - Biological Process for RPS28P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS28P5 Gene

Drugs & Compounds for RPS28P5 Gene

No Compound Related Data Available

Transcripts for RPS28P5 Gene

mRNA/cDNA for RPS28P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS28P5 Gene

No ASD Table

Relevant External Links for RPS28P5 Gene

GeneLoc Exon Structure for
RPS28P5
ECgene alternative splicing isoforms for
RPS28P5

Expression for RPS28P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS28P5 Gene:

RPS28P5
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS28P5 Gene

Orthologs for RPS28P5 Gene

Evolution for RPS28P5 Gene

ENSEMBL:
Gene Tree for RPS28P5 (if available)
TreeFam:
Gene Tree for RPS28P5 (if available)

No data available for Orthologs for RPS28P5 Gene

Paralogs for RPS28P5 Gene

No data available for Paralogs for RPS28P5 Gene

Variants for RPS28P5 Gene

Relevant External Links for RPS28P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS28P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS28P5 Gene

Disorders for RPS28P5 Gene

No disorders were found for RPS28P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS28P5 Gene

Publications for RPS28P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS28P5 Gene

Sources for RPS28P5 Gene

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