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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RPS28 Gene

protein-coding   GIFtS: 53
GCID: GC19P008386

Ribosomal Protein S28

Microbiology & Infectious Diseases Congress
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Ribosomal Protein S281 2
40S Ribosomal Protein S281 2
S282

External Ids:    HGNC: 104181   Entrez Gene: 62342   Ensembl: ENSG000002339277   OMIM: 6036855   UniProtKB: P628573   

Export aliases for RPS28 gene to outside databases

Previous GC identifers: GC19M008155 GC19P008476 GC19P008281 GC19P008292 GC19P008040


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RPS28 Gene:
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit.
Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This
gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S28E family
of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there
are multiple processed pseudogenes of this gene dispersed through the genome. (provided by RefSeq, Jul 2008)

GeneCards Summary for RPS28 Gene: 
RPS28 (ribosomal protein S28) is a protein-coding gene. Diseases associated with RPS28 include pasteurellosis, and diamond-blackfan anemia, and among its related super-pathways are Eukaryotic Translation Initiation and Formation of the ternary complex, and subsequently, the 43S complex. GO annotations related to this gene include structural constituent of ribosome.

Gene Wiki entry for RPS28 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.2  NT_077812.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RPS28 gene promoter:
         Bach1   AML1a   Bach2   CUTL1   GATA-2   C/EBPalpha   RORalpha1   CHOP-10   HEN1   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRPS28 promoter sequence
   Search SABiosciences Chromatin IP Primers for RPS28

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RPS28


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.2   Ensembl cytogenetic band:  19p13.2   HGNC cytogenetic band: 19p13.2

RPS28 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RPS28 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P008386:  view genomic region     (about GC identifiers)

Start:
8,386,042 bp from pter      End:
8,388,224 bp from pter
Size:
2,183 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RS28_HUMAN, P62857 (See protein sequence)
Recommended Name: 40S ribosomal protein S28  
Size: 69 amino acids; 7841 Da
1 PDB 3D structure from and Proteopedia for RPS28:
3J3A (3D)    
Secondary accessions: P25112

Explore the universe of human proteins at neXtProt for RPS28: NX_P62857

Explore proteomics data for RPS28 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P62857

  • RPS28 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    RPS28 Protein Expression
    REFSEQ proteins: NP_001022.1  
    ENSEMBL proteins: 
     ENSP00000472469  
    Reactome Protein details: P62857
    Human Recombinant Protein Products for RPS28: 
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    Cloud-Clone Corp. Proteins for RPS28 

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005829cytosol TAS--
    GO:0005840ribosome ----
    GO:0015935small ribosomal subunit IDA15883184
    GO:0022627cytosolic small ribosomal subunit IDA15883184

    RPS28 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    RPS: S ribosomal proteins

    2 InterPro protein domains:
     IPR012340 NA-bd_OB-fold
     IPR000289 Ribosomal_S28e

    Graphical View of Domain Structure for InterPro Entry P62857

    ProtoNet protein and cluster: P62857

    UniProtKB/Swiss-Prot: RS28_HUMAN, P62857
    Similarity: Belongs to the ribosomal protein S28e family


    RPS28 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:
         Genatlas biochemistry entry for RPS28:
    60S ribosomal protein S28

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003735structural constituent of ribosome IEA--
         
    RPS28 for ontologies           About GeneDecksing


    Phenotypes:
         3 GenomeRNAi human phenotypes for RPS28:
     Decreased Hepatitis C virus re  Nuclear 40S maturation defects  Nucleolar pre-40S maturation d 

         1 MGI mutant phenotype (inferred from 2 alleles(MGI details for Rps28):
     normal 

    RPS28 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for RPS28 
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for RPS28 
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for RPS28 

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    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for RPS28 About   (see all 6)                                                                                              See pathways by source

    SuperPathSelected contained pathways About (see all per SuperPath)
    1Viral mRNA Translation
    Influenza Life Cycle0.95
    3' -UTR-mediated translational regulation0.93
    Influenza Infection0.95
    L13a-mediated translational silencing of Ceruloplasmin expression0.93
    Nonsense Mediated Decay Independent of the Exon Junction Complex0.94
    Formation of a pool of free 40S subunits0.90
    Eukaryotic Translation Termination0.94
    Nonsense-Mediated Decay0.84
    2Translation initiation complex formation
    Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S0.95
    Formation of the ternary complex, and subsequently, the 43S complex0.87
    Ribosomal scanning and start codon recognition0.95
    Translation initiation complex formation0.87
    3Metabolism of mRNA
    Metabolism of mRNA0.92
    Metabolism of RNA0.92
    4Generic Transcription Pathway
    Gene Expression0.47
    5Asparagine N-linked glycosylation
    Metabolism of proteins0.35

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 GeneGo (Thomson Reuters) Pathway for RPS28
        CFTR translational fidelity (class I mutations)

    1 BioSystems Pathway for RPS28
        Cytoplasmic Ribosomal Proteins

    5/27        Reactome Pathways for RPS28 (see all 27)
        Formation of the ternary complex, and subsequently, the 43S complex
    Nonsense Mediated Decay Independent of the Exon Junction Complex
    Nonsense-Mediated Decay
    Translation
    SRP-dependent cotranslational protein targeting to membrane


    1         Kegg Pathway  (Kegg details for RPS28):
        Ribosome


    RPS28 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RPS28

    5/119 Interacting proteins for RPS28 (P628571, 2, 3) via UniProtKB, MINT, STRING, and/or I2D (see all 119)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PFDN1O609252, 3MINT-8266029 I2D: score=2 
    PINX1Q96BK51, 3EBI-353027,EBI-721782 I2D: score=2 
    RPS16P622492MINT-8044065 MINT-8044024 MINT-8395092
    RPS19P390192MINT-8044065 MINT-8044024 MINT-8395092
    RPS12P253982MINT-8044024 MINT-8395092
    About this table

    Gene Ontology (GO): 5/15 biological process terms (GO ID links to tree view) (see all 15):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS--
    GO:0006364rRNA processing IMP18697920
    GO:0006412translation TAS--
    GO:0006413translational initiation TAS--
    GO:0006414translational elongation TAS--

    RPS28 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RPS28 (RS28)

    Search CenterWatch for drugs/clinical trials and news about RPS28 / RS28

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RPS28 gene: 
    NM_001031.4  

    Unigene Clusters for RPS28:

    Ribosomal protein S28
    Hs.153177  [show with all ESTs], Hs.322473  [show with all ESTs]
    Unigene Representative Sequences: CD048071, CD387408
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000449223(uc002mjn.3) ENST00000602140 ENST00000600659 ENST00000417088

    Congresses - knowledge worth sharing:  
    European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

    miRNA
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    Inhib. RNA
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RPS28
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    Additional mRNA sequence: 

    AK293636.1 AK301638.1 BC000354.1 BC018810.1 BC021239.2 BC070217.1 BC070218.1 L05091.1 
    U58682.1 

    24/29 DOTS entries (see all 29):

    DT.100052497  DT.99949585  DT.100670984  DT.451349  DT.97834548  DT.100700773  DT.120701836  DT.100700774 
    DT.100700769  DT.100748990  DT.95334037  DT.100685164  DT.120701851  DT.95334122  DT.95334140  DT.95334250 
    DT.100048650  DT.121498047  DT.95202774  DT.101985544  DT.120701844  DT.120701821  DT.120701829  DT.120701832 

    24/643 AceView cDNA sequences (see all 643):

    BQ219700 AJ705575 AA931759 BM510958 BU783146 F29320 BM090881 BU070406 
    BM855378 AA295700 AA316396 AA315185 AI434633 AA302262 AA320477 AA947517 
    AI281819 BE328682 BM730100 BM818859 AW137757 AW162626 CD679505 AW514347 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RPS28 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GACGACACGA
    RPS28 Expression
    About this image


    See RPS28 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RPS28

    SOURCE GeneReport for Unigene clusters: Hs.153177 Hs.322473
        SABiosciences Custom PCR Arrays for RPS28
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPS28

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RPS28 gene from 9/24 species (see all 24)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rps285 ribosomal protein S28   --   17 (17.98 cM) 33819027 
    chicken
    (Gallus gallus)
    Aves RPS281 ribosomal protein S28 86.47(n)
    100(a)
      768930  XM_001231864.2  XP_001231865.2 
    African clawed frog
    (Xenopus laevis)
    Amphibia 480578502   -- 78.28(n)    48057850 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.249232 Danio rerio cDNA clone MGC73367 IMAGE4146224, complete more 77.42(n)    BC059677.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta RpS28b1 Ribosomal protein S28b 71.43(n)
    79.37(a)
      31897  NM_132340.3  NP_572568.1 
    worm
    (Caenorhabditis elegans)
    Secernentea rps-281 Protein RPS-28 72.68(n)
    86.89(a)
      176975  NM_067714.3  NP_500115.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes RPS28A1 Rps28ap 63.98(n)
    75.81(a)
      854338   NP_014810.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons RPS281 40S ribosomal protein S28-2 68.33(n)
    80(a)
      836535  NM_125810.2  NP_201219.1 
    rice
    (Oryza sativa)
    Liliopsida AA752078.12   -- 95.5(n)    AA752078.1 


    ENSEMBL Gene Tree for RPS28 (if available)
    TreeFam Gene Tree for RPS28 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RPS28 gene

    RPS28 for paralogs           About GeneDecksing


    5/11 Pseudogenes.org Pseudogenes for RPS28 (see all 11)
    PGOHUM00000250414 PGOHUM00000239788 PGOHUM00000248574 PGOHUM00000248202 PGOHUM00000237260


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for RPS28:    About this table     
    Variant IDTypeSubtypePubMed ID
    dgv3719n71CNV Loss21882294
    dgv3718n71CNV Loss21882294

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 603685    OMIM disorders: --

    4 diseases for RPS28:    About MalaCards
    pasteurellosis    diamond-blackfan anemia    anemia    influenza

    1 disease from the University of Copenhagen DISEASES database for RPS28:
    Pasteurellosis

    RPS28 for disorders           About GeneDecksing


    Export disorders for RPS28 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RPS28 gene, integrated from 9 sources (see all 33):
    (articles sorted by number of sources associating them with RPS28)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A map of 75 human ribosomal protein genes. (PubMed id 9582194)1, 2, 3 Kenmochi N.... Page D.C. (1998)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PubMed id 11875025)1, 2 Yoshihama M.... Kenmochi N. (2002)
    4. Characterization of the human small-ribosomal-subunit proteins by N- terminal and internal sequencing, and mass spectrometry. (PubMed id 8706699)1, 2 Vladimirov S.N.... Otto A. (1996)
    5. A cDNA sequence of human ribosomal protein, homologue of yeast S28. (PubMed id 8415000)1, 3 Hori N.... Matsubara K. (1993)
    6. The intracellular interactome of tetraspanin-enriched microdomains reveals their function as sorting machineries toward exosomes. (PubMed id 23463506)1 Perez-Hernandez D....Yanez-Mo M. (2013)
    7. Quantitative study of the interactome of PKCz involved in the EGF-induced tumor cell chemotaxis. (PubMed id 23402259)1 Chen R....Zhang N. (2013)
    8. Interlaboratory reproducibility of large-scale human p rotein-complex analysis by standardized AP-MS. (PubMed id 23455922)1 Varjosalo M....Superti-Furga G. (2013)
    9. Structures of the human and Drosophila 80S ribosome. (PubMed id 23636399)2 Anger A.M.... Beckmann R. (2013)
    10. A Proteomics Strategy for the Identification of FAT10- Modified Sites by Mass Spectrometry. (PubMed id 23862649)1 Leng L....Wang J. (2013)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 6234 HGNC: 10418 AceView: RPS28 Ensembl:ENSG00000233927 euGenes: HUgn6234
    ECgene: RPS28 Kegg: 6234 H-InvDB: RPS28

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RPS28 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RPS28 gene:
    Search GeneIP for patents involving RPS28

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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