Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS27P9 Gene

Aliases for RPS27P9 Gene

  • Ribosomal Protein S27 Pseudogene 9 2 3
  • RP3-423B22.5 5
  • RPS27_1_33 3

External Ids for RPS27P9 Gene

Previous GeneCards Identifiers for RPS27P9 Gene

  • GC01P037797
  • GC01P038022

Summaries for RPS27P9 Gene

GeneCards Summary for RPS27P9 Gene

RPS27P9 (Ribosomal Protein S27 Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27P9 Gene

Genomics for RPS27P9 Gene

Regulatory Elements for RPS27P9 Gene

Enhancers for RPS27P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F037533 0.7 Ensembl ENCODE 11.8 -21.6 -21583 2.4 HDGF ARNT CREB3L1 ARID4B SIN3A YY1 ZNF766 FOS SP3 JUNB SNIP1 GNL2 SF3A3 FTH1P1 CDCA8 DNALI1 RPS27P9 MEAF6 LINC01137 LOC105378649
GH01F037513 0.2 ENCODE 11.2 -41.6 -41584 2.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 SNIP1 GNL2 DNALI1 MEAF6 SF3A3 RPS27P9 FTH1P1 RSPO1 LINC01137 MIR5581
GH01F037497 0.2 ENCODE 11 -58.2 -58173 0.1 NFIA YY2 ZNF600 YY1 MIR6732 LINC01137 ZC3H12A RPS27P9 SNIP1 DNALI1 MIR5581 PIR46555
GH01F037507 0.2 ENCODE 10.7 -48.1 -48096 0.9 BCOR ZNF146 IKZF1 EED ZNF580 JUNB KDM1A DNALI1 LINC01137 MIR6732 ZC3H12A RPS27P9 SNIP1 GNL2 MEAF6 MIR5581
GH01F037451 0.7 ENCODE 10.7 -103.5 -103548 1.7 IKZF1 POU5F1 REST ETS1 LINC01137 MIR6732 ZC3H12A DNALI1 RPS27P9 SNIP1 RSPO1 GC01M037470 PIR53142
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS27P9 on UCSC Golden Path with GeneCards custom track

Promoters for RPS27P9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000534666 186 400 HDGF RFX1 POLR2A ARID4B DPF2 ZNF652
ENSR00001743827 885 601 HDGF TBP SAP130 ARID4B MAX BMI1 RAD21 ZNF644 YY1 ZFHX2

Genomic Location for RPS27P9 Gene

Chromosome:
1
Start:
37,556,215 bp from pter
End:
37,556,553 bp from pter
Size:
339 bases
Orientation:
Plus strand

Genomic View for RPS27P9 Gene

Genes around RPS27P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P9 Gene

Proteins for RPS27P9 Gene

Post-translational modifications for RPS27P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P9 Gene

Domains & Families for RPS27P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P9 Gene

Function for RPS27P9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P9 Gene

Localization for RPS27P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27P9 Gene

Pathways & Interactions for RPS27P9 Gene

SuperPathways for RPS27P9 Gene

No Data Available

Interacting Proteins for RPS27P9 Gene

Gene Ontology (GO) - Biological Process for RPS27P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P9 Gene

Transcripts for RPS27P9 Gene

mRNA/cDNA for RPS27P9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P9 Gene

No ASD Table

Relevant External Links for RPS27P9 Gene

GeneLoc Exon Structure for
RPS27P9
ECgene alternative splicing isoforms for
RPS27P9

Expression for RPS27P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS27P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P9 Gene:

RPS27P9
genes like me logo Genes that share expression patterns with RPS27P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS27P9 Gene

Orthologs for RPS27P9 Gene

Evolution for RPS27P9 Gene

ENSEMBL:
Gene Tree for RPS27P9 (if available)
TreeFam:
Gene Tree for RPS27P9 (if available)

No data available for Orthologs for RPS27P9 Gene

Paralogs for RPS27P9 Gene

No data available for Paralogs for RPS27P9 Gene

Variants for RPS27P9 Gene

Relevant External Links for RPS27P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P9 Gene

Disorders for RPS27P9 Gene

No disorders were found for RPS27P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS27P9 Gene

Publications for RPS27P9 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS27P9 Gene

Sources for RPS27P9 Gene

Content
Loading form....